hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-07393769/chunk_1/iprscan-20080812-07393769.nocrc
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Query sequence: hh02438
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
SM00038                                                 587.8     4e-172   1
SM00214                                                  90.5      2e-22   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
SM00214           1/1      44    99 ..     1    75 []    90.5    2e-22
SM00038           1/1    1268  1502 .]     1   240 []   587.8   4e-172

Alignments of top-scoring domains:
SM00214: domain 1 of 1, from 44 to 99: score 90.5, E = 2e-22
                   *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc
                      C++ nG++y +++ Wkp  pCqiC+C++g ++lCdk+eC +++    
     hh02438    44    CTQ-NGQMYLNRDIWKPA-PCQICVCDNG-AILCDKIECQDVL---- 83   

                   kdsdCpnperlpavaekppGeCCpeyrC<-*
                      dC+ p       + ppGeCCp  +C   
     hh02438    84 ---DCADP-------VTPPGECCP--VC    99   

SM00038: domain 1 of 1, from 1268 to 1502: score 587.8, E = 4e-172
                   *->deeifasLkslnnLHKqIEqlksPtGskdnPARtCkDLkLcHpelkd
                      d+ ++a+Lksl++   qIE+++sP+Gsk++PARtC+DLkLcH+++++
     hh02438  1268    DPGVHATLKSLSS---QIETMRSPDGSKKHPARTCDDLKLCHSAKQS 1311 

                   GeYWvDPNqGCirDAikVfCnfetGvgeTCvspspssiprktWysgkskd
                   GeYW+DPNqG+++DAikV+Cn+et  geTC+s++pss+prktW+++ks+d
     hh02438  1312 GEYWIDPNQGSVEDAIKVYCNMET--GETCISANPSSVPRKTWWASKSPD 1359 

                   kkhvWFgetmngGfkFsYgdsegsp.vgvvQLTFLRLLSteAsQniTYhC
                   +k+vW+g++mn+G++F+Ygd++ sp+++++Q+TFLRLLS+eAsQniTY+C
     hh02438  1360 NKPVWYGLDMNRGSQFAYGDHQ-SPnTAITQMTFLRLLSKEASQNITYIC 1408 

                   KNSvAYmDeatGNlkkAlilrgsnDvElsaegnskftYeVLeDGCqkrtg
                   KNSv+YmD++++NlkkA++l+g+nD++++aegn++f+Y+VL+D+C+kr+g
     hh02438  1409 KNSVGYMDDQAKNLKKAVVLKGANDLDIKAEGNIRFRYIVLQDTCSKRNG 1458 

                   kwgKTViEyrTkkteRLPIvDiAPsDIGGadQeFGveiGPVCFs<-*
                   ++gKTV+EyrT++++RLPI+D+AP+D+GG+dQeFGveiGPVCF+   
     hh02438  1459 NVGKTVFEYRTQNVARLPIIDLAPVDVGGTDQEFGVEIGPVCFV    1502 

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