hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-07453726/chunk_1/iprscan-20080812-07453726.nocrc
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Query sequence: hh02890
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00054                                                  46.6    3.3e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00054    1/2     207   235 ..     1    29 []    26.7   0.0033
SM00054    2/2     243   271 ..     1    29 []    19.9     0.35

Alignments of top-scoring domains:
SM00054: domain 1 of 2, from 207 to 235: score 26.7, E = 0.0033
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      +l+ +F+++D+ +dG+Id+ E+k ++ +l   
     hh02890   207    DLESMFKLYDAGRDGFIDLMELKLMMEKL    235  

SM00054: domain 2 of 2, from 243 to 271: score 19.9, E = 0.35
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       lk +++e+D D dGk++f Ef+ ++++    
     hh02890   243    GLKSMIKEVDEDFDGKLSFREFLLIFHKA    271  

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