hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-07515384/chunk_1/iprscan-20080812-07515384.nocrc
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Query sequence: hh03137
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    174.6    2.3e-49   3
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    171.7    1.7e-48   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/3     136   202 ..     1    69 [.    65.8  1.1e-17
PF00076.12.ls   1/3     136   208 ..     1    74 []    67.2    5e-17
PF00076.12.fs   2/3     217   278 ..     1    62 [.    36.0  2.4e-09
PF00076.12.ls   2/3     217   285 ..     1    74 []    35.7  1.5e-07
PF00076.12.fs   3/3     312   375 ..     1    74 []    69.9  7.7e-19
PF00076.12.ls   3/3     312   375 ..     1    74 []    71.7  2.1e-18

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 3, from 136 to 202: score 65.8, E = 1.1e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fVg +p+d+ e++L  lF+k Gpi + +++ D  + tg ++G+aFV
     hh03137   136    IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMD--PLTGLNRGYAFV 180  

                   eFedeedAekAldalnGkelgg<-*
                   +F ++e+A++A++ +n++e+++   
     hh03137   181 TFCTKEAAQEAVKLYNNHEIRS    202  

PF00076.12.ls: domain 1 of 3, from 136 to 208: score 67.2, E = 5e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fVg +p+d+ e++L  lF+k Gpi + +++ D  + tg ++G+aFV
     hh03137   136    IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMD--PLTGLNRGYAFV 180  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   +F ++e+A++A++ +n++ +  g+ + v   
     hh03137   181 TFCTKEAAQEAVKLYNNhEIRSGKHIGV    208  

PF00076.12.fs: domain 2 of 3, from 217 to 278: score 36.0, E = 2.4e-09
                   *->lfVgNLppdtteedLkdlFsk.fGpiesikivrDttretgrskGfaF
                      lfVg +p++ t+e++ + Fsk   + +++ + +  +  +++++Gf+F
     hh03137   217    LFVGSIPKSKTKEQILEEFSKvTEGLTDVILYH-QPDDKKKNRGFCF 262  

                   VeFedeedAekAldal<-*
                    e+ed+  A+ A + l   
     hh03137   263 LEYEDHKTAAQARRRL    278  

PF00076.12.ls: domain 2 of 3, from 217 to 285: score 35.7, E = 1.5e-07
                   *->lfVgNLppdtteedLkdlFsk.fGpiesikivrDttretgrskGfaF
                      lfVg +p++ t+e++ + Fsk   + +++ + +  +  +++++Gf+F
     hh03137   217    LFVGSIPKSKTKEQILEEFSKvTEGLTDVILYH-QPDDKKKNRGFCF 262  

                   VeFedeedAekAldalnGkelggrelrv<-*
                    e+ed+  A+ A +      l++ +++v   
     hh03137   263 LEYEDHKTAAQARR-----RLMSGKVKV    285  

PF00076.12.fs: domain 3 of 3, from 312 to 375: score 69.9, E = 7.7e-19
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfV+NL + +tee L+++Fs+fG+ e++k  +D          +aF+
     hh03137   312    LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----------YAFI 348  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+  ++A kA++++nGk l+g ++++   
     hh03137   349 HFDERDGAVKAMEEMNGKDLEGENIEI    375  

PF00076.12.ls: domain 3 of 3, from 312 to 375: score 71.7, E = 2.1e-18
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfV+NL + +tee L+++Fs+fG+ e++k  +D          +aF+
     hh03137   312    LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----------YAFI 348  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+  ++A kA++++nGk l+g ++++   
     hh03137   349 HFDERDGAVKAMEEMNGKDLEGENIEI    375  

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