hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-07515384/chunk_1/iprscan-20080812-07515384.nocrc
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Query sequence: hh03137
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor famil   871.5   1.3e-259   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR01648   1/1      75   534 .]     1   611 []   871.5 1.3e-259

Alignments of top-scoring domains:
TIGR01648: domain 1 of 1, from 75 to 534: score 871.5, E = 1.3e-259
                   *->esdeksGsssKVqegvkGapdEAaLkALveRTGYtLvqenGQRKYGG
                      +++ek+G  +KV ++ kG pdEA++kAL+eRTGYtL++++GQRKYGG
     hh03137    75    RQREKQG--TKVADSSKG-PDEAKIKALLERTGYTLDVTTGQRKYGG 118  

                   PPPgSVweGvqPerGcEVFVGKiPRDLYEDELVPLfEkvGkIYeLRLMMD
                   PPP+SV++G qP  G+E+FVGKiPRDL+EDELVPLfEk+G+I++LRLMMD
     hh03137   119 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMD 168  

                   PfdGkNRGYAFVtFcnKeeAkeAVkelnnYEIRpGrlLGVCiSVdNcRLF
                   P+ G NRGYAFVtFc Ke+A+eAVk+ nn EIR G++ GVCiSV+N+RLF
     hh03137   169 PLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLF 218  

                   VGgIPKtKkreeILeEisKVTEGvvdVIvYasAaDKkKNRGFAFvEYEsH
                   VG+IPK K++e ILeE+sKVTEG+ dVI+Y++++DKkKNRGF+F+EYE+H
     hh03137   219 VGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH 268  

                   rAAAmARRkLmpGriqlWGhviaVdWAePevevDedvMakVKiLYVRNLm
                   + AA+ARR+Lm+G++++WG+v +V+WA+P +++D++vMakVK+L+VRNL+
     hh03137   269 KTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLA 318  

                   lettEEiieKsFsefkPGavERVKKirDYAFVHFedRedAVkAMdeLNGk
                    ++tEEi+eK Fs+f  G++ERVKK++DYAF+HF +R  AVkAM+e+NGk
     hh03137   319 NTVTEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 366  

                   eLeGseiEVtLAKPvDKesYvRYtkaakGrgkelqAarqYslsyVYdpas
                    LeG+ iE++ AKP+D +            +ke+ A rq         a 
     hh03137   367 DLEGENIEIVFAKPPDQK------------RKERKAQRQ---------AA 395  

                   rslAyedYYynaliaAiPsldypakkGsirgRGrgaAgsvRGaaGgrGlg
                   +   y dYYy  +         p ++++ rgRGrg+    R   Gg+G++
     hh03137   396 KNQMYDDYYYYGP---------PHMPPPTRGRGRGG----R---GGYGYP 429  

                   lDYrGYeaYrglYrGYDYhekkgkredklYdlvpglElsPvnpValkPgG
                   +DY+GYe+Y++ Y+GYDYh ++g++ed++Y++ +          ++++ G
     hh03137   430 PDYYGYEDYYD-YYGYDYHNYRGGYEDPYYGYEDF-----QVGARGRG-G 472  

                   ikaaPaileeisrFKnaaPaPvYqLHskIiedgrilflekiiiPaavsqd
                   ++a++a  + ++r   +a +P          +gr          a++sq+
     hh03137   473 RGARGA-APSRGR---GAAPP----------RGR----------AGYSQR 498  

                   PAiAaalappkaSAaVreAkstpAeyqqrglgPvrtsaGnvqriataGak
                   + +    + +++    r+A++++ +  qrg+g   + + +          
     hh03137   499 GGP----GSARGV---RGARGGAQQ--QRGRG--QGKGVE---------- 527  

                   akAydGYaaPdAtarvanaqqnkaAaavAqqPLqqGgDyAGyigyevYaa
                          a P                                        
     hh03137   528 -------AGP---------------------------------------- 530  

                   FlvvdrqdvYqDTY<-*
                          d  q      
     hh03137   531 -------DLLQ---    534  

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