hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-16565380/chunk_1/iprscan-20090525-16565380.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh03515 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00060.17.ls Ligand-gated ion channel 543.7 1.8e-160 1 PF00060.17.fs Ligand-gated ion channel 541.9 6.4e-160 1 PF01094.18.ls Receptor family ligand binding region 233.6 4.1e-67 1 PF01094.18.fs Receptor family ligand binding region 231.9 1.3e-66 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01094.18.fs 1/1 50 386 .. 1 421 [] 231.9 1.3e-66 PF01094.18.ls 1/1 50 386 .. 1 421 [] 233.6 4.1e-67 PF00060.17.fs 1/1 549 840 .. 1 304 [] 541.9 6.4e-160 PF00060.17.ls 1/1 549 840 .. 1 304 [] 543.7 1.8e-160 Alignments of top-scoring domains: PF01094.18.fs: domain 1 of 1, from 50 to 386: score 231.9, E = 1.3e-66 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd q +A+r+A++ + + llp i+++ + d hh03515 50 QEHAAFRFALSQLTEPPK-LLPQIDIVNI----------------SD 79 .aavaaaacllkskgVvaiiGPscssvaiavarlanewgiPlisygatap ++ +++ c++ skgV+ai+G + ++ ++ ++++++++ +i+++++ + hh03515 80 sFEMTYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVD 129 slsdklknryptfaRtvpsdtkq.gaAiadilkhtfgWkrvaviyddddy + + v + +A+++i+ h ++W++++ iyd d + hh03515 130 TSNQ-----------FVLQLRPElQDALISIIDH-YKWQKFVYIYDADRG 167 dygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissdddftal l+ l+++l a k+++v + v+ ++ ++ + hh03515 168 ----------LSVLQKVLDTAAEKNWQV---------TAVNILTTTEEGY 198 lkelkdlikskarvivlcgssddlg.llkrqilrqarelGlmsggYvwil +dl k+k+r +v++++s++l+ +l + i ++ ++ gY++il hh03515 199 RMLFQDLEKKKERLVVVDCESERLNaILGQIIKLEK-----NGIGYHYIL 243 tdlwsdsldsqgdgsdlpwariagadeGlltartfpfqldndkareaakg ++l + + +d k++e +++ hh03515 244 ANLGFMD-------------------------------IDLNKFKESGAN 262 vlgitlk.p.spefqeflerlkk.........sdtevnayallaYDAVyl v+g++l++ +++ ++++++k+++ +++++ + + + + ++l+YD+V++ hh03515 263 VTGFQLVnYtDTIPAKIMQQWKNsdardhtrvDWKRPKYTSALTYDGVKV 312 lAhAlnealrddpngtaglcnacrdsrvddasnalg.g.lnlg.lmkw.d +A+A++ ++r++ ++++++ + g+++++++ +w++ hh03515 313 MAEAFQSLRRQRIDISRRG----------------NaGdCLANpAVPWgQ 346 GsqlleylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* G+++ ++l++ v+FeGltG+vqf++ grr++y+l ++ ++ hh03515 347 GIDIQRALQQ-VRFEGLTGNVQFNE-KGRRTNYTLHVIEMKH 386 PF01094.18.ls: domain 1 of 1, from 50 to 386: score 233.6, E = 4.1e-67 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd q +A+r+A++ + + llp i+++ + d hh03515 50 QEHAAFRFALSQLTEPPK-LLPQIDIVNI----------------SD 79 .aavaaaacllkskgVvaiiGPscssvaiavarlanewgiPlisygatap ++ +++ c++ skgV+ai+G + ++ ++ ++++++++ +i+++++ + hh03515 80 sFEMTYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVD 129 slsdklknryptfaRtvpsdtkq.gaAiadilkhtfgWkrvaviyddddy + + v + +A+++i+ h ++W++++ iyd d + hh03515 130 TSNQ-----------FVLQLRPElQDALISIIDH-YKWQKFVYIYDADRG 167 dygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissdddftal l+ l+++l a k+++v + v+ ++ ++ + hh03515 168 ----------LSVLQKVLDTAAEKNWQV---------TAVNILTTTEEGY 198 lkelkdlikskarvivlcgssddlg.llkrqilrqarelGlmsggYvwil +dl k+k+r +v++++s++l+ +l + i ++ ++ gY++il hh03515 199 RMLFQDLEKKKERLVVVDCESERLNaILGQIIKLEK-----NGIGYHYIL 243 tdlwsdsldsqgdgsdlpwariagadeGlltartfpfqldndkareaakg ++l + + +d k++e +++ hh03515 244 ANLGFMD-------------------------------IDLNKFKESGAN 262 vlgitlk.p.spefqeflerlkk.........sdtevnayallaYDAVyl v+g++l++ +++ ++++++k+++ +++++ + + + + ++l+YD+V++ hh03515 263 VTGFQLVnYtDTIPAKIMQQWKNsdardhtrvDWKRPKYTSALTYDGVKV 312 lAhAlnealrddpngtaglcnacrdsrvddasnalg.g.lnlg.lmkw.d +A+A++ ++r++ ++++++ + g+++++++ +w++ hh03515 313 MAEAFQSLRRQRIDISRRG----------------NaGdCLANpAVPWgQ 346 GsqlleylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* G+++ ++l++ v+FeGltG+vqf++ grr++y+l ++ ++ hh03515 347 GIDIQRALQQ-VRFEGLTGNVQFNE-KGRRTNYTLHVIEMKH 386 PF00060.17.fs: domain 1 of 1, from 549 to 840: score 541.9, E = 6.4e-160 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcnedd... e+W+ci++ay++vsvvlflv+r fsPyew+ +++e+++++ hh03515 549 AYEIWMCIVFAYIGVSVVLFLVSR-FSPYEWHS-----EEFEEGrdq 589 ....qspeeepnqftlsnslWFsfgalmqQGcdelPrslSgRivvgvWwf ++++q +n+f ++nslWFs+ga+mqQGcd++PrslSgRiv+gvWwf hh03515 590 ttsdQ-----SNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWF 634 FaLilisSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstf F+Li+isSYTANLAAFLTverm+spIes+eDLakq+ +i YGtl+ gst+ hh03515 635 FTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQT-EIAYGTLEAGSTK 683 tffkeskiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpengl +ff++ski+++ +mw ym+s+ Psvfv+++eeG+ rVr++ +g+ hh03515 684 EFFRRSKIAVFEKMWTYMKSAE-----PSVFVRTTEEGMIRVRKS--KGK 726 yAFlmEstyleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdkls yA+l Est++ey+ +r+p Cd+++vG+ ++++kGYGIA+pkgS lr ++ hh03515 727 YAYLLESTMNEYIEQRKP-CDTMKVGG-NLDSKGYGIATPKGSALRGPVN 774 lAILeLsEsGelekLenKWwkkkgkCpsesta..vsssqLglenfaGlFl lA+L+LsE+G+l+kL+ KWw++kg+C s+++ +++++s+L+l+n+aG+F+ hh03515 775 LAVLKLSEQGVLDKLKSKWWYDKGECGSKDSGskDKTSALSLSNVAGVFY 824 iLgiGlvLallvalfE<-* iL++Gl+La+lval+E hh03515 825 ILIGGLGLAMLVALIE 840 PF00060.17.ls: domain 1 of 1, from 549 to 840: score 543.7, E = 1.8e-160 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcnedd... e+W+ci++ay++vsvvlflv+r fsPyew+ +++e+++++ hh03515 549 AYEIWMCIVFAYIGVSVVLFLVSR-FSPYEWHS-----EEFEEGrdq 589 ....qspeeepnqftlsnslWFsfgalmqQGcdelPrslSgRivvgvWwf ++++q +n+f ++nslWFs+ga+mqQGcd++PrslSgRiv+gvWwf hh03515 590 ttsdQ-----SNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWF 634 FaLilisSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstf F+Li+isSYTANLAAFLTverm+spIes+eDLakq+ +i YGtl+ gst+ hh03515 635 FTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQT-EIAYGTLEAGSTK 683 tffkeskiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpengl +ff++ski+++ +mw ym+s+ Psvfv+++eeG+ rVr++ +g+ hh03515 684 EFFRRSKIAVFEKMWTYMKSAE-----PSVFVRTTEEGMIRVRKS--KGK 726 yAFlmEstyleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdkls yA+l Est++ey+ +r+p Cd+++vG+ ++++kGYGIA+pkgS lr ++ hh03515 727 YAYLLESTMNEYIEQRKP-CDTMKVGG-NLDSKGYGIATPKGSALRGPVN 774 lAILeLsEsGelekLenKWwkkkgkCpsesta..vsssqLglenfaGlFl lA+L+LsE+G+l+kL+ KWw++kg+C s+++ +++++s+L+l+n+aG+F+ hh03515 775 LAVLKLSEQGVLDKLKSKWWYDKGECGSKDSGskDKTSALSLSNVAGVFY 824 iLgiGlvLallvalfE<-* iL++Gl+La+lval+E hh03515 825 ILIGGLGLAMLVALIE 840 //