hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-08033693/chunk_1/iprscan-20080812-08033693.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh03521 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00148 320.1 1.5e-91 1 SM00149 247.2 1.3e-69 1 SM00252 225.8 3.6e-63 2 SM00326 68.7 7.2e-16 1 SM00233 64.5 1.4e-14 3 SM00239 58.1 1.1e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/3 155 266 .. 1 82 [] 37.1 2.4e-06 SM00148 1/1 442 586 .. 1 182 [] 320.1 1.5e-91 SM00233 2/3 611 802 .. 1 82 [] 6.2 41 SM00252 1/2 670 767 .. 1 87 [] 117.1 1.9e-30 SM00252 2/2 788 869 .. 1 87 [] 108.7 6.6e-28 SM00326 1/1 916 972 .. 1 58 [] 68.7 7.2e-16 SM00233 3/3 926 1055 .. 1 82 [] 21.2 0.15 SM00149 1/1 1075 1192 .. 1 119 [] 247.2 1.3e-69 SM00239 1/1 1211 1314 .. 1 92 [] 58.1 1.1e-12 Alignments of top-scoring domains: SM00233: domain 1 of 3, from 155 to 266: score 37.1, E = 2.4e-06 *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk.kpkgsipLsgc. +++ + +kks+++ +k + L ++++++ + +k g i++++++ hh03521 155 TVMTLFYSKKSqRpERKTFQVKLETRQITWSRGAdKIEGAIDIREIk 201 svre.p....................cFeivt.dr....tlllqAeseee ++r+++ +++ ++ +++ +++ ++cF i ++ + + +tl lqA se+e hh03521 202 EIRPgKtsrdfdryqedpafrpdqshCFVILYgMEfrlkTLSLQATSEDE 251 reeWvealqsaiaka<-* ++W++ l ++++ hh03521 252 VNMWIKGLTWLMEDT 266 SM00148: domain 1 of 1, from 442 to 586: score 320.1, E = 1.5e-91 *->qDmdkPLshYfInsSHNsGtfkidiFPFGLDAPEKLRLPPYVTFLLR ++m++PLshY+I+sSHN hh03521 442 DTMNNPLSHYWISSSHN------------------------------ 458 FTYLtgkQlwgessvegYiqaLkaGcRcvELDcwdgpdgePviyHGhTft TYLtg+Q+ +ess e+Y ++L++GcRc+ELDcwdgpdg+PviyHGhT+t hh03521 459 -TYLTGDQFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTLT 507 skikLsdVleaIKkfAFvtSpyPEFvIlSLenHcspdqQakmaqmfkeiF +kik+sdVl +IK++AFv+S+yP vIlS+e+Hcs qQ+ maq+fk+++ hh03521 508 TKIKFSDVLHTIKEHAFVASEYP--VILSIEDHCSIAQQRNMAQYFKKVL 555 gdlLytkPltsseeypgsnLPsPeqLkgKILLkgK<-* gd L+tkP + s ++ LPsP+qLk+KIL+k+K hh03521 556 GDTLLTKPVEISADG----LPSPNQLKRKILIKHK 586 SM00233: domain 2 of 3, from 611 to 802: score 6.2, E = 41 *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk............ ik G L+ + ++ w ++yfvL+++ ++y ++ ++++++++++++ hh03521 611 SIKNGILYLEDpvNhEWYPHYFVLTSSKIYYSEETssdqgnedeeep 657 ..........................kpkgsipLsgcsvre.p....... ++ +++++ +++++ +++ + +++++++ + L+++ ++ ++++++ hh03521 658 kevssstelhsnekwfhgklgagrdgRHIAERLLTEYCIETgApdgsflv 707 .................................................. ++++ ++ + ++++ + + +++ + + ++ ++ ++ + hh03521 708 resetfvgdytlsfwrngkvqhcrihsrqdagtpkffltdnlvfdslydl 757 ............cFeivt.drtlllqAeseeereeWvealqsaiaka<-* + + + + Fe + ++ + q++ +e++e ++l +a+a++ hh03521 758 ithyqqvplrcnEFEMRLsEP--VPQTNAHESKEWYHASLTRAQAEH 802 SM00252: domain 1 of 2, from 670 to 767: score 117.1, E = 1.9e-30 *->epWYHGki.....sReeAEklLkne....ggpdGtFLvRdSesspgd e W+HGk++ +++ R+ AE+lL + ++g pdG+FLvR+Se++ gd hh03521 670 EKWFHGKLgagrdGRHIAERLLTEYcietGAPDGSFLVRESETFVGD 716 yvLSvrvkgkvkHyrIrrtdd...gkfylggtprrkFpsL.eLvehYqkn y+LS++ +gkv+H+rI++ +d ++ kf+l++ + F+sL +L+ hYq+ hh03521 717 YTLSFWRNGKVQHCRIHSRQDagtPKFFLTD--NLVFDSLyDLITHYQQV 764 slg<-* +l+ hh03521 765 PLR 767 SM00252: domain 2 of 2, from 788 to 869: score 108.7, E = 6.6e-28 *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvkg +WYH ++R++AE++L+++ ++dG+FLvR + p++y++S+r +g hh03521 788 KEWYHASLTRAQAEHMLMRV-PRDGAFLVRKRNE-PNSYAISFRAEG 832 kvkHyrIrrtddgkfylggtprrkFpsL.eLvehYqknslg<-* k+kH+r+++++ + lg F+sL +L+ +Y k++l+ hh03521 833 KIKHCRVQQEG-QTVMLGN---SEFDSLvDLISYYEKHPLY 869 SM00326: domain 1 of 1, from 916 to 972: score 68.7, E = 7.2e-16 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG + v+Al+Dy+aq edEL+F+k ii+ +ek ++gWw+G + k+ hh03521 916 CAVKALFDYKAQREDELTFTKSAIIQNVEKQEGGWWRGDYG-GKKQL 961 lfPsnYVeeie<-* +fPsnYVee+ hh03521 962 WFPSNYVEEMV 972 SM00233: domain 3 of 3, from 926 to 1055: score 21.2, E = 0.15 *->vikeGwLlkks................k.swkkryfvLfngvLlyyk ++e L+ ++ ++ ++ ++ +++ k+ + + ++++ hh03521 926 AQREDELTFTKsaiiqnvekqeggwwrGdYGGKKQLWFPSNYVEEMV 972 sk..................kpkgsipLsgcsvre.p........cFeiv ++ ++++++ +++++ ++ ++g++++ c++ +p++++++ +F i+ hh03521 973 NPvaleperehldensplgdLLRGVLDVPACQIAIrPegknnrlfVFSIS 1022 t.dr...tlllqAeseeereeWvealqsaiaka<-* + + + +l ++A+s+ee+++Wv+ ++++++ a hh03521 1023 MaSVahwSLDVAADSQEELQDWVKKIREVAQTA 1055 SM00149: domain 1 of 1, from 1075 to 1192: score 247.2, E = 1.3e-69 *->lseLvsycapvkFrsfelaeekdnafyemsSfsEtkaakkllekap. lseLv+yc+pv+F++ + e+ +++++msSf+Etk a+k+++ka + hh03521 1075 LSELVVYCRPVPFDEEKIGTER-ACYRDMSSFPETK-AEKYVNKAKg 1119 tdfvryNqrqLsRvYPkGtRvDSSNYnPqvfWnaGcQMVALNfQTpDkaM ++f++yN+ qLsR+YPkG+R+DSSNY+P+++W++G+Q+VALNfQTpDk+M hh03521 1120 KKFLQYNRLQLSRIYPKGQRLDSSNYDPLPMWICGSQLVALNFQTPDKPM 1169 qlNqGmFraNGgCGYVLKPefLR<-* q+Nq++F+ + +CGYVL+P+ +R hh03521 1170 QMNQALFMTGRHCGYVLQPSTMR 1192 SM00239: domain 1 of 1, from 1211 to 1314: score 58.1, E = 1.1e-12 *->tLtvkiisArnLp.......DPYVkvs...........kTkvvkktl + + ++ Ar+Lp+++++ P+V+++ + +++++kT+ v +++ hh03521 1211 AISIEVLGARHLPkngrgivCPFVEIEvagaeydstkqKTEFVVDNG 1257 sgfNPvWnEesetFeFevpp...s.LeieVyDk......dfiGrvtippn +NPvW + F+F +++++ + L++ Vy+++ ++ f+ ++t+p hh03521 1258 --LNPVWPAK--PFHFQISNpefAfLRFVVYEEdmfsdqNFLAQATFP-- 1301 nahqhsadglihlsell.ggrh.kl<-* ++ l++g+r +l hh03521 1302 ------------VKGLKtGYRAvPL 1314 //