hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-08283328/chunk_1/iprscan-20080812-08283328.nocrc
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Query sequence: hh03719
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         235.5    1.1e-67  14
PF00096.16.fs Zinc finger, C2H2 type                         209.7      6e-60  14

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   2/14    365   390 ..     1    24 []    22.8   0.0011
PF00096.16.ls   5/14    465   489 ..     1    24 []    22.3   0.0016
PF00096.16.ls   6/14    495   519 ..     1    24 []    20.6   0.0053
PF00096.16.ls   7/14    648   673 ..     1    24 []    22.9    0.001
PF00096.16.ls   8/14    821   846 ..     1    24 []    18.4    0.024
PF00096.16.fs   9/14    866   889 ..     1    24 []    25.8  3.5e-05
PF00096.16.ls   9/14    866   889 ..     1    24 []    27.8  3.6e-05

Alignments of top-scoring domains:
PF00096.16.ls: domain 2 of 14, from 365 to 390: score 22.8, E = 0.0011
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      y Cp +dC ++F++ + L  Hl+ +H   
     hh03719   365    YPCPGtDCSRVFKQFKYLSVHLKAeH    390  

PF00096.16.ls: domain 5 of 14, from 465 to 489: score 22.3, E = 0.0016
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ykC+ ++C+ +Fs+ ++L +H   H   
     hh03719   465    YKCELnGCNIVFSDLGQLYHHEAQH    489  

PF00096.16.ls: domain 6 of 14, from 495 to 519: score 20.6, E = 0.0053
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+C+f +C+k + +k ++++Hl +H   
     hh03719   495    YTCNFlGCKKFYYSKIEYQNHLSMH    519  

PF00096.16.ls: domain 7 of 14, from 648 to 673: score 22.9, E = 0.001
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      ++C f++Cg ++++   +++Hlr+ H   
     hh03719   648    FTCGFdGCGSTYKNARGMQKHLRKvH    673  

PF00096.16.ls: domain 8 of 14, from 821 to 846: score 18.4, E = 0.024
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      + C+ ++C++ F +++ L +H  ++H   
     hh03719   821    FFCELqGCKYEFVTREALLMHYLKkH    846  

PF00096.16.fs: domain 9 of 14, from 866 to 889: score 25.8, E = 3.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C+ +C++sF+rk +L+ H + +H   
     hh03719   866    FQCH-ICQRSFTRKTHLRIHYKNkH    889  

PF00096.16.ls: domain 9 of 14, from 866 to 889: score 27.8, E = 3.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C+ +C++sF+rk +L+ H + +H   
     hh03719   866    FQCH-ICQRSFTRKTHLRIHYKNkH    889  

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