hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-08283328/chunk_1/iprscan-20080812-08283328.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh03719 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 309.4 2.5e-88 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/15 249 270 .. 1 23 [] 2.9 1.5e+02 SM00355 2/15 276 298 .. 1 23 [] 21.6 0.11 SM00355 3/15 365 390 .. 1 23 [] 22.4 0.063 SM00355 4/15 408 430 .. 1 23 [] 18.5 0.92 SM00355 5/15 436 460 .. 1 23 [] 16.2 4.7 SM00355 6/15 465 489 .. 1 23 [] 26.5 0.0038 SM00355 7/15 495 519 .. 1 23 [] 24.2 0.019 SM00355 8/15 648 673 .. 1 23 [] 26.8 0.003 SM00355 9/15 821 846 .. 1 23 [] 25.6 0.007 SM00355 10/15 866 889 .. 1 23 [] 26.3 0.0043 SM00355 11/15 1004 1029 .. 1 23 [] 22.5 0.06 SM00355 12/15 1056 1081 .. 1 23 [] 15.7 5.4 SM00355 13/15 1101 1126 .. 1 23 [] 23.1 0.039 SM00355 14/15 1138 1163 .. 1 23 [] 21.7 0.1 SM00355 15/15 1243 1268 .. 1 23 [] 15.5 5.6 Alignments of top-scoring domains: SM00355: domain 1 of 15, from 249 to 270: score 2.9, E = 1.5e+02 *->ykCpigCgksfsskaLkrHmrvH<-* + C + C++ + + +H ++H hh03719 249 FFCLL-CKRECIEARILHHSKMH 270 SM00355: domain 2 of 15, from 276 to 298: score 21.6, E = 0.11 *->ykCpigCgksfssk.aLkrHmrvH<-* y+Cp+ C k+f++k+ ++ H++ H hh03719 276 YTCPV-CIKKFKRKeMFVPHVMEH 298 SM00355: domain 3 of 15, from 365 to 390: score 22.4, E = 0.063 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* y Cp ++C+++f++ + L H++ H hh03719 365 YPCPGtDCSRVFKQFkYLSVHLKaEH 390 SM00355: domain 4 of 15, from 408 to 430: score 18.5, E = 0.92 *->ykCpigCgksfssk.aLkrHmrvH<-* kC++ C ++f s+ +L++H +vH hh03719 408 EKCTY-CRRHFMSAfHLREHEQVH 430 SM00355: domain 5 of 15, from 436 to 460: score 16.2, E = 4.7 *->ykCpi.gCgksfssk.aLkrHmrvH<-* y C +C +f s ++L +H ++H hh03719 436 YMCVSiDCYARFGSVnELLNHKQKH 460 SM00355: domain 6 of 15, from 465 to 489: score 26.5, E = 0.0038 *->ykCpi.gCgksfssk.aLkrHmrvH<-* ykC+++gC+ +fs+ ++L +H +H hh03719 465 YKCELnGCNIVFSDLgQLYHHEAQH 489 SM00355: domain 7 of 15, from 495 to 519: score 24.2, E = 0.019 *->ykCpi.gCgksfssk.aLkrHmrvH<-* y+C++ gC+k + sk ++++H+ +H hh03719 495 YTCNFlGCKKFYYSKiEYQNHLSMH 519 SM00355: domain 8 of 15, from 648 to 673: score 26.8, E = 0.003 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* ++C ++gCg ++++++ +++H+r+vH hh03719 648 FTCGFdGCGSTYKNArGMQKHLRkVH 673 SM00355: domain 9 of 15, from 821 to 846: score 25.6, E = 0.007 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* + C+++gC++ f +++aL H+ ++H hh03719 821 FFCELqGCKYEFVTReALLMHYLkKH 846 SM00355: domain 10 of 15, from 866 to 889: score 26.3, E = 0.0043 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C+i C++sf++k++L+ H++++H hh03719 866 FQCHI-CQRSFTRKtHLRIHYKnKH 889 SM00355: domain 11 of 15, from 1004 to 1029: score 22.5, E = 0.06 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* ++C ++ C+ sf++ + L+rH+r+vH hh03719 1004 FHCIHkTCNSSFTNLkGLIRHYRtVH 1029 SM00355: domain 12 of 15, from 1056 to 1081: score 15.7, E = 5.4 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* + C+++ C+k+f +aL +H ++H hh03719 1056 FACKYkECNKRFLCSkALAKHCSdSH 1081 SM00355: domain 13 of 15, from 1101 to 1126: score 23.1, E = 0.039 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* + C++++C+ +f + + Lk+H++++H hh03719 1101 FSCNQpQCPAVFYTFnKLKHHLMeQH 1126 SM00355: domain 14 of 15, from 1138 to 1163: score 21.7, E = 0.1 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* +C+++gCg+ f++++++ +H++ +H hh03719 1138 IHCDLnGCGQIFTHRsNYSQHVYyRH 1163 SM00355: domain 15 of 15, from 1243 to 1268: score 15.5, E = 5.6 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* y C ++gC + + +++ +rH++++H hh03719 1243 YPCMVqGCLSVVKLEsSIVRHYKrTH 1268 //