hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-15135079/chunk_1/iprscan-20090618-15135079.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh04063 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06472.5.ls ABC transporter transmembrane region 2 532.0 5.9e-157 1 PF06472.5.fs ABC transporter transmembrane region 2 530.1 2.1e-156 1 PF00005.17.ls ABC transporter 151.9 1.5e-42 1 PF00005.17.fs ABC transporter 150.1 5.2e-42 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06472.5.fs 1/1 91 378 .. 1 296 [] 530.1 2.1e-156 PF06472.5.ls 1/1 91 378 .. 1 296 [] 532.0 5.9e-157 PF00005.17.fs 1/1 517 693 .. 1 224 [] 150.1 5.2e-42 PF00005.17.ls 1/1 517 693 .. 1 224 [] 151.9 1.5e-42 Alignments of top-scoring domains: PF06472.5.fs: domain 1 of 1, from 91 to 378: score 530.1, E = 2.1e-156 *->lhldaaflrrllqLlkilirPrwfskeaglLlalaalLvlRTflsvl ++++a+f+++ll+L kil+ P+++ e+g+L++++++L++RTfls++ hh04063 91 PGVNADFFKQLLELRKILF-PKLVTTETGWLCLHSVALISRTFLSIY 136 vaqldgqlvkalvaknargFlrlllkwallavpasfvnsalkYltqkLaL va ldg++vk++v+k++r+F++ l+kw+++a+pa+fvnsa++Yl++kLaL hh04063 137 VAGLDGKIVKSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLAL 186 rfRtrLtrhlhdeYLknrltYYkvsnldgdtridNPDQriTqDVekFcss +fRtrL++h+++ Y+ n+ tYYkv n+dg r++NPDQ++T+D+++F++s hh04063 187 AFRTRLVDHAYETYFTNQ-TYYKVINMDG--RLANPDQSLTEDIMMFSQS 233 lsdLysnllkPilDiilftfiLwrlsGwlgpfnleIPramswilflYvll +++Lysnl+kPilD+ l++++L++ ++ +g+ + P++++++++l+v++ hh04063 234 VAHLYSNLTKPILDVMLTSYTLIQTATSRGA--S--PIGPTLLAGLVVYA 279 savilralsPPfgkLvaeeqrlEGefRyvHsRLitNaEEIAFYrGeevEk +a +l+a+sP+fgkLvaee++++G++RyvHsR+i+N+EEIAFYrG++vE+ hh04063 280 TAKVLKACSPKFGKLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEM 329 ktldrsFksLidhmrrilrrrlwygfiedfvlKYlwsivGyvlvalPiF< k+l++s+k+L d+m++il++rlwy++ie+f++KY+ws G+++va+Pi+ hh04063 330 KQLQKSYKALADQMNLILSKRLWYIMIEQFLMKYVWSSSGLIMVAIPII 378 -* hh04063 - - PF06472.5.ls: domain 1 of 1, from 91 to 378: score 532.0, E = 5.9e-157 *->lhldaaflrrllqLlkilirPrwfskeaglLlalaalLvlRTflsvl ++++a+f+++ll+L kil+ P+++ e+g+L++++++L++RTfls++ hh04063 91 PGVNADFFKQLLELRKILF-PKLVTTETGWLCLHSVALISRTFLSIY 136 vaqldgqlvkalvaknargFlrlllkwallavpasfvnsalkYltqkLaL va ldg++vk++v+k++r+F++ l+kw+++a+pa+fvnsa++Yl++kLaL hh04063 137 VAGLDGKIVKSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLAL 186 rfRtrLtrhlhdeYLknrltYYkvsnldgdtridNPDQriTqDVekFcss +fRtrL++h+++ Y+ n+ tYYkv n+dg r++NPDQ++T+D+++F++s hh04063 187 AFRTRLVDHAYETYFTNQ-TYYKVINMDG--RLANPDQSLTEDIMMFSQS 233 lsdLysnllkPilDiilftfiLwrlsGwlgpfnleIPramswilflYvll +++Lysnl+kPilD+ l++++L++ ++ +g+ + P++++++++l+v++ hh04063 234 VAHLYSNLTKPILDVMLTSYTLIQTATSRGA--S--PIGPTLLAGLVVYA 279 savilralsPPfgkLvaeeqrlEGefRyvHsRLitNaEEIAFYrGeevEk +a +l+a+sP+fgkLvaee++++G++RyvHsR+i+N+EEIAFYrG++vE+ hh04063 280 TAKVLKACSPKFGKLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEM 329 ktldrsFksLidhmrrilrrrlwygfiedfvlKYlwsivGyvlvalPiF< k+l++s+k+L d+m++il++rlwy++ie+f++KY+ws G+++va+Pi+ hh04063 330 KQLQKSYKALADQMNLILSKRLWYIMIEQFLMKYVWSSSGLIMVAIPII 378 -* hh04063 - - PF00005.17.fs: domain 1 of 1, from 517 to 693: score 150.1, E = 5.2e-42 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G +l ++GpNG+GKS+L+++lsGl++ eG +l+ ++p++ hh04063 517 GMHLLITGPNGCGKSSLFRILSGLWP-VY--EG-VLYKPPPQH---- 555 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkagg.k + y++Q p+ +++r+++ y ++ ++ +++ hh04063 556 ---------------MFYIPQRPYMS---LGSLRDQVIYPDSVDDMHDkG 587 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ereallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg + +d+ +e +L++v+l + ++r +g + + ++ + hh04063 588 Y-------------TDQDLERILHNVHLYHIVQR----EGGWDAVMDWKD 620 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge LSGG+kQR++ AR+++ kpk+ lLDE+T++ ++ +++++++ + hh04063 621 VLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAK----G 666 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* gi++l itH++ l+++ +++l ++ hh04063 667 AGISLLSITHRPS-LWKYHTHLLQFDGE 693 PF00005.17.ls: domain 1 of 1, from 517 to 693: score 151.9, E = 1.5e-42 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G +l ++GpNG+GKS+L+++lsGl++ eG +l+ ++p++ hh04063 517 GMHLLITGPNGCGKSSLFRILSGLWP-VY--EG-VLYKPPPQH---- 555 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkagg.k + y++Q p+ +++r+++ y ++ ++ +++ hh04063 556 ---------------MFYIPQRPYMS---LGSLRDQVIYPDSVDDMHDkG 587 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ereallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg + +d+ +e +L++v+l + ++r +g + + ++ + hh04063 588 Y-------------TDQDLERILHNVHLYHIVQR----EGGWDAVMDWKD 620 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge LSGG+kQR++ AR+++ kpk+ lLDE+T++ ++ +++++++ + hh04063 621 VLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAK----G 666 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* gi++l itH++ l+++ +++l ++ hh04063 667 AGISLLSITHRPS-LWKYHTHLLQFDGE 693 //