hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-08402533/chunk_1/iprscan-20080812-08402533.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh04442y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03028.6.ls Dynein heavy chain 1571.1 0 1 PF03028.6.fs Dynein heavy chain 1569.3 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03028.6.fs 1/1 700 1403 .. 1 783 [] 1569.3 0 PF03028.6.ls 1/1 700 1403 .. 1 783 [] 1571.1 0 Alignments of top-scoring domains: PF03028.6.fs: domain 1 of 1, from 700 to 1403: score 1569.3, E = 0 *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk +++++ +p+ d+l++q+W++i++Lse++eF++Ld d+e++a krWk hh04442y2 700 FKAGVVSPV-DFLQHQGWGGIKALSEMDEFKNLDSDIEGSA--KRWK 743 kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty k+++se+P E+e++PkeWk +k+a+qKL+++R+lRPDR+ty hh04442y2 744 KLVESEAP-EKEIFPKEWK----------NKTALQKLCMVRCLRPDRMTY 782 alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk a++nFveek+ G+kfve+ +++++sk+ye eSspst i+FiLSPG+DP+k hh04442y2 783 AIKNFVEEKM-GSKFVEG-RSVEFSKSYE-ESSPSTSIFFILSPGVDPLK 829 dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ dve+L+kk+GFt+dnGk lh++SLGQGQ++ +Ae+a++ Aa++GhWV+LQ hh04442y2 830 DVEALGKKLGFTIDNGK-LHNVSLGQGQEV-VAENALDVAAEKGHWVILQ 877 NiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPigl NiHL+a+WL tL+KkLe+++ g+H+d+R+F++aEpap+Pe+hI+P+g+ hh04442y2 878 NIHLVARWLGTLDKKLERYST--GSHEDYRVFISAEPAPSPETHIIPQGI 925 LqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllFlL L+n+iKiTNEPPtG++ANL++a++ f+q++lemc+k++efk++lF+L hh04442y2 926 LENAIKITNEPPTGMHANLHKALDL---FTQDTLEMCTKEMEFKCMLFAL 972 CfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRqNi C+FHAVV+ERRkFG +GWN+sY+FN +DL+iS +vl+nyLean hh04442y2 973 CYFHAVVAERRKFGAQGWNRSYPFNNGDLTISINVLYNYLEAN------- 1015 dpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgnad +kvPW++LRYlfGeimYGG+ItDdwDrRL+rtyL e++++e+++g d hh04442y2 1016 --PKVPWDDLRYLFGEIMYGGHITDDWDRRLCRTYLAEYIRTEMLEG--D 1061 yeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAEIg + Lap gf++Ppn dy++Y+eyI+e+LP+es P+l+GLhpNAEIg hh04442y2 1062 VLLAP------GFQIPPNLDYKGYHEYIDENLPPES-PYLYGLHPNAEIG 1104 fltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvlrd flt+++ekl+rt+le+Qp+e ++ ++g g vsr EE+vk+vl+d hh04442y2 1105 FLTVTSEKLFRTVLEMQPKETDS--GAGTG--VSR-----EEKVKAVLDD 1145 ileklpkklCqklFdkeelmlkrteeikdPlfvVlvQEiermNkLlkeir ilek+p + F++ e+m+k +k+P++vV++QE+ermN+L++e+r hh04442y2 1146 ILEKIP-----ETFNMAEIMAKA--AEKTPYVVVAFQECERMNILTNEMR 1188 rSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslkpLg rSLkeL lglkGelt+++d+E+l ++L+++ VP+ +W++++yPs+++L+ hh04442y2 1189 RSLKELNLGLKGELTITTDVEDLSTALFYDTVPD--TWVARAYPSMMGLA 1236 sWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAimQsv +W++DLl Rir+L+ Wt+d ++lP +vWL+GFFnPQsFLTAimQs+ hh04442y2 1237 AWYADLLLRIRELEAWTTD-----FALPTTVWLAGFFNPQSFLTAIMQSM 1281 ARknkwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGArWDsk ARkn+wPLDk+cL++eVtkk++e++++ pP++G yV+GLf+EGArWD++ hh04442y2 1282 ARKNEWPLDKMCLSVEVTKKNREDMTA--PPREGSYVYGLFMEGARWDTQ 1329 tgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRggvL tg++ae+++KeL+++mPVi++ka+p+ d++etk++yecPVYkt+ Rg+ hh04442y2 1330 TGVIAEARLKELTPAMPVIFIKAIPV-DRMETKNIYECPVYKTRIRGP-- 1376 STTGHStnyvftfnLktkedtpaskWilaGVALllq<-* +yv+tfnLktke +a+kWila+VALllq hh04442y2 1377 -------TYVWTFNLKTKE--KAAKWILAAVALLLQ 1403 PF03028.6.ls: domain 1 of 1, from 700 to 1403: score 1571.1, E = 0 *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk +++++ +p+ d+l++q+W++i++Lse++eF++Ld d+e++a krWk hh04442y2 700 FKAGVVSPV-DFLQHQGWGGIKALSEMDEFKNLDSDIEGSA--KRWK 743 kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty k+++se+P E+e++PkeWk +k+a+qKL+++R+lRPDR+ty hh04442y2 744 KLVESEAP-EKEIFPKEWK----------NKTALQKLCMVRCLRPDRMTY 782 alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk a++nFveek+ G+kfve+ +++++sk+ye eSspst i+FiLSPG+DP+k hh04442y2 783 AIKNFVEEKM-GSKFVEG-RSVEFSKSYE-ESSPSTSIFFILSPGVDPLK 829 dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ dve+L+kk+GFt+dnGk lh++SLGQGQ++ +Ae+a++ Aa++GhWV+LQ hh04442y2 830 DVEALGKKLGFTIDNGK-LHNVSLGQGQEV-VAENALDVAAEKGHWVILQ 877 NiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPigl NiHL+a+WL tL+KkLe+++ g+H+d+R+F++aEpap+Pe+hI+P+g+ hh04442y2 878 NIHLVARWLGTLDKKLERYST--GSHEDYRVFISAEPAPSPETHIIPQGI 925 LqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllFlL L+n+iKiTNEPPtG++ANL++a++ f+q++lemc+k++efk++lF+L hh04442y2 926 LENAIKITNEPPTGMHANLHKALDL---FTQDTLEMCTKEMEFKCMLFAL 972 CfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRqNi C+FHAVV+ERRkFG +GWN+sY+FN +DL+iS +vl+nyLean hh04442y2 973 CYFHAVVAERRKFGAQGWNRSYPFNNGDLTISINVLYNYLEAN------- 1015 dpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgnad +kvPW++LRYlfGeimYGG+ItDdwDrRL+rtyL e++++e+++g d hh04442y2 1016 --PKVPWDDLRYLFGEIMYGGHITDDWDRRLCRTYLAEYIRTEMLEG--D 1061 yeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAEIg + Lap gf++Ppn dy++Y+eyI+e+LP+es P+l+GLhpNAEIg hh04442y2 1062 VLLAP------GFQIPPNLDYKGYHEYIDENLPPES-PYLYGLHPNAEIG 1104 fltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvlrd flt+++ekl+rt+le+Qp+e ++ ++g g vsr EE+vk+vl+d hh04442y2 1105 FLTVTSEKLFRTVLEMQPKETDS--GAGTG--VSR-----EEKVKAVLDD 1145 ileklpkklCqklFdkeelmlkrteeikdPlfvVlvQEiermNkLlkeir ilek+p + F++ e+m+k +k+P++vV++QE+ermN+L++e+r hh04442y2 1146 ILEKIP-----ETFNMAEIMAKA--AEKTPYVVVAFQECERMNILTNEMR 1188 rSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslkpLg rSLkeL lglkGelt+++d+E+l ++L+++ VP+ +W++++yPs+++L+ hh04442y2 1189 RSLKELNLGLKGELTITTDVEDLSTALFYDTVPD--TWVARAYPSMMGLA 1236 sWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAimQsv +W++DLl Rir+L+ Wt+d ++lP +vWL+GFFnPQsFLTAimQs+ hh04442y2 1237 AWYADLLLRIRELEAWTTD-----FALPTTVWLAGFFNPQSFLTAIMQSM 1281 ARknkwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGArWDsk ARkn+wPLDk+cL++eVtkk++e++++ pP++G yV+GLf+EGArWD++ hh04442y2 1282 ARKNEWPLDKMCLSVEVTKKNREDMTA--PPREGSYVYGLFMEGARWDTQ 1329 tgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRggvL tg++ae+++KeL+++mPVi++ka+p+ d++etk++yecPVYkt+ Rg+ hh04442y2 1330 TGVIAEARLKELTPAMPVIFIKAIPV-DRMETKNIYECPVYKTRIRGP-- 1376 STTGHStnyvftfnLktkedtpaskWilaGVALllq<-* +yv+tfnLktke +a+kWila+VALllq hh04442y2 1377 -------TYVWTFNLKTKE--KAAKWILAAVALLLQ 1403 //