hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-08461213/chunk_1/iprscan-20080812-08461213.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hh04944
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF09068.1.ls EF hand                                        276.6    4.6e-80   1
PF09068.1.fs EF hand                                        274.6    1.8e-79   1
PF09069.1.ls EF-hand                                        198.8    1.2e-56   1
PF09069.1.fs EF-hand                                        196.9    4.3e-56   1
PF00569.8.fs Zinc finger, ZZ type                            35.2    5.6e-09   1
PF00569.8.ls Zinc finger, ZZ type                            37.4    4.7e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF09068.1.ls   1/1      25   151 ..     1   127 []   276.6  4.6e-80
PF09068.1.fs   1/1      25   151 ..     1   127 []   274.6  1.8e-79
PF09069.1.fs   1/1     155   243 ..     1    94 []   196.9  4.3e-56
PF09069.1.ls   1/1     155   243 ..     1    94 []   198.8  1.2e-56
PF00569.8.ls   1/1     248   293 ..     1    46 []    37.4  4.7e-08
PF00569.8.fs   1/1     250   293 ..     1    46 []    35.2  5.6e-09

Alignments of top-scoring domains:
PF09068.1.ls: domain 1 of 1, from 25 to 151: score 276.6, E = 4.6e-80
                   *->kMtELfqsLraaDLNnIRFSAYRTAmKLRrlQKaLcLDLldlwnaie
                      ++++Lf ++ra+DL++IR+S+YRTA+KLR++QK+++L+L+d+wn+ie
     hh04944    25    ERRQLFAEMRAQDLDRIRLSTYRTACKLRFVQKKCNLHLVDIWNVIE 71   

                   aFrqhgLnalqndtlldVsemitcLttlYenLekRLehthlVnVplcVDl
                   a+r++ Ln+l+++t+l+Vs+++ +L+t++++L+kR+++th+++V+++++l
     hh04944    72 ALRENALNNLDPNTELNVSRLEAVLSTIFYQLNKRMPTTHQIHVEQSISL 121  

                   cLNWLLNVYDtqRsGkirVLSfKvgLitLC<-*
                   +LN+LL+++D +++Gki+V+++K++L+tLC   
     hh04944   122 LLNFLLAAFDPEGHGKISVFAVKMALATLC    151  

PF09068.1.fs: domain 1 of 1, from 25 to 151: score 274.6, E = 1.8e-79
                   *->kMtELfqsLraaDLNnIRFSAYRTAmKLRrlQKaLcLDLldlwnaie
                      ++++Lf ++ra+DL++IR+S+YRTA+KLR++QK+++L+L+d+wn+ie
     hh04944    25    ERRQLFAEMRAQDLDRIRLSTYRTACKLRFVQKKCNLHLVDIWNVIE 71   

                   aFrqhgLnalqndtlldVsemitcLttlYenLekRLehthlVnVplcVDl
                   a+r++ Ln+l+++t+l+Vs+++ +L+t++++L+kR+++th+++V+++++l
     hh04944    72 ALRENALNNLDPNTELNVSRLEAVLSTIFYQLNKRMPTTHQIHVEQSISL 121  

                   cLNWLLNVYDtqRsGkirVLSfKvgLitLC<-*
                   +LN+LL+++D +++Gki+V+++K++L+tLC   
     hh04944   122 LLNFLLAAFDPEGHGKISVFAVKMALATLC    151  

PF09069.1.fs: domain 1 of 1, from 155 to 243: score 196.9, E = 4.3e-56
                   *->LedKYRYlFsqvsdsnglldqrklglLLhdaiqlPrqlGEvasFGgS
                      ++dK+RY+Fs++sds g++++++++++L+++++lP++++E++sFG+ 
     hh04944   155    IMDKLRYIFSMISDSSGVMVYGRYDQFLREVLKLPTAVFEGPSFGY- 200  

                   NiEpSVrSCFeqvnlkpkIeanqFLdwlklEPpPQSlVWLPvLHRLa<-*
                    +E+S+rSCF+q   ++k+++n FLd+l+++PpPQ+lVWLP+LHRLa   
     hh04944   201 -TEQSARSCFSQ---QKKVTLNGFLDTLMSDPPPQCLVWLPLLHRLA    243  

PF09069.1.ls: domain 1 of 1, from 155 to 243: score 198.8, E = 1.2e-56
                   *->LedKYRYlFsqvsdsnglldqrklglLLhdaiqlPrqlGEvasFGgS
                      ++dK+RY+Fs++sds g++++++++++L+++++lP++++E++sFG+ 
     hh04944   155    IMDKLRYIFSMISDSSGVMVYGRYDQFLREVLKLPTAVFEGPSFGY- 200  

                   NiEpSVrSCFeqvnlkpkIeanqFLdwlklEPpPQSlVWLPvLHRLa<-*
                    +E+S+rSCF+q   ++k+++n FLd+l+++PpPQ+lVWLP+LHRLa   
     hh04944   201 -TEQSARSCFSQ---QKKVTLNGFLDTLMSDPPPQCLVWLPLLHRLA    243  

PF00569.8.ls: domain 1 of 1, from 248 to 293: score 37.4, E = 4.7e-08
                   *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm<
                        + ++C  C +  + g+RY+C++C +Y LCq Cf  Gh +g H   
     hh04944   248    VFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSN  293  

                   -*
                     
     hh04944     -    -    

PF00569.8.fs: domain 1 of 1, from 250 to 293: score 35.2, E = 5.6e-09
                   *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm<
                        + ++C  C +  + g+RY+C++C +Y LCq Cf  Gh +g H   
     hh04944   250    --HPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSN  293  

                   -*
                     
     hh04944     -    -    

//