hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-08584162/chunk_1/iprscan-20080812-08584162.nocrc
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Query sequence: hh05223
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00225.13.ls Kinesin motor domain                           617.4   1.2e-182   1
PF00225.13.fs Kinesin motor domain                           615.7   3.8e-182   1
PF00498.16.fs FHA domain                                      44.9    1.1e-12   1
PF00498.16.ls FHA domain                                      46.7    7.3e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00225.13.fs   1/1      17   361 ..     1   424 []   615.7 3.8e-182
PF00225.13.ls   1/1      17   361 ..     1   424 []   617.4 1.2e-182
PF00498.16.fs   1/1     531   602 ..     1    94 []    44.9  1.1e-12
PF00498.16.ls   1/1     531   602 ..     1    94 []    46.7  7.3e-11

Alignments of top-scoring domains:
PF00225.13.fs: domain 1 of 1, from 17 to 361: score 615.7, E = 3.8e-182
                   *->RvRPlnerEksrgssdvvnv..sedvessvitn.gkektFtFDkVFd
                      RvRP+n+rE sr+s++++++++s ++++++++ ++++k+F+FD+ ++
     hh05223    17    RVRPFNSREMSRDSKCIIQMsgSTTTIVNPKQPkETPKSFSFDYSYW 63   

                   peatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKT
                   ++++    e+++YAsq++vy++++++++++++eGyNv+IFAYGQTG+GK+
     hh05223    64 SHTSP---EdInYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 110  

                   YTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpv
                   YTM+G+ +               +++ GiiP  +edlF+ri++++ +   
     hh05223   111 YTMMGKQE---------------KDQQGIIPQLCEDLFSRINDTTND--- 142  

                   fKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIY
                                                       ++++sv+vSy+EIY
     hh05223   143 ------------------------------------NMSYSVEVSYMEIY 156  

                   NEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGL
                   +E++rDLL+p+             +k + Lr+re+p  G     +yV++L
     hh05223   157 CERVRDLLNPK-------------NKGN-LRVREHPLLG-----PYVEDL 187  

                   teveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntd
                   +   Vts++++++l++ Gnk Rtva+T+mNe+SSRSHa+F i+ +q+++d
     hh05223   188 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHD 237  

                   ttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaa
                   ++++++t+         +vsk++LVDLAGSERa+ Tg   A g RLkE+a
     hh05223   238 AETNITTE---------KVSKISLVDLAGSERADSTG---AKGTRLKEGA 275  

                   nINkSLsaLGnVInALadnq..........kssHiPYRDSKLTrLLQDSL
                   nINkSL +LG+VI+ALa+  ++++++++++k ++iPYRDS+LT+LL++ L
     hh05223   276 NINKSLTTLGKVISALAEMDsgpnknkkkkKTDFIPYRDSVLTWLLRENL 325  

                   GGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   GG  Ns+T+M+a +SP++     ny+ETLsTLr+A+RAK+I+   
     hh05223   326 GG--NSRTAMVAALSPADI----NYDETLSTLRYADRAKQIR    361  

PF00225.13.ls: domain 1 of 1, from 17 to 361: score 617.4, E = 1.2e-182
                   *->RvRPlnerEksrgssdvvnv..sedvessvitn.gkektFtFDkVFd
                      RvRP+n+rE sr+s++++++++s ++++++++ ++++k+F+FD+ ++
     hh05223    17    RVRPFNSREMSRDSKCIIQMsgSTTTIVNPKQPkETPKSFSFDYSYW 63   

                   peatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKT
                   ++++    e+++YAsq++vy++++++++++++eGyNv+IFAYGQTG+GK+
     hh05223    64 SHTSP---EdInYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 110  

                   YTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpv
                   YTM+G+ +               +++ GiiP  +edlF+ri++++ +   
     hh05223   111 YTMMGKQE---------------KDQQGIIPQLCEDLFSRINDTTND--- 142  

                   fKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIY
                                                       ++++sv+vSy+EIY
     hh05223   143 ------------------------------------NMSYSVEVSYMEIY 156  

                   NEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGL
                   +E++rDLL+p+             +k + Lr+re+p  G     +yV++L
     hh05223   157 CERVRDLLNPK-------------NKGN-LRVREHPLLG-----PYVEDL 187  

                   teveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntd
                   +   Vts++++++l++ Gnk Rtva+T+mNe+SSRSHa+F i+ +q+++d
     hh05223   188 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHD 237  

                   ttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaa
                   ++++++t+         +vsk++LVDLAGSERa+ Tg   A g RLkE+a
     hh05223   238 AETNITTE---------KVSKISLVDLAGSERADSTG---AKGTRLKEGA 275  

                   nINkSLsaLGnVInALadnq..........kssHiPYRDSKLTrLLQDSL
                   nINkSL +LG+VI+ALa+  ++++++++++k ++iPYRDS+LT+LL++ L
     hh05223   276 NINKSLTTLGKVISALAEMDsgpnknkkkkKTDFIPYRDSVLTWLLRENL 325  

                   GGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   GG  Ns+T+M+a +SP++     ny+ETLsTLr+A+RAK+I+   
     hh05223   326 GG--NSRTAMVAALSPADI----NYDETLSTLRYADRAKQIR    361  

PF00498.16.fs: domain 1 of 1, from 531 to 602: score 44.9, E = 1.1e-12
                   *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf
                      +++GR       + ++ qdi+l+g++i  +H++++ ++ g++     
     hh05223   531    TRVGR------EDGERRQDIVLSGhFIKEEHCVFRSDSRGGSEAVV- 570  

                   rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             +l++++++     t+vNgk++  +ep  L+sG++i +G  
     hh05223   571 ----------TLEPCEGAD----TYVNGKKV--TEPSILRSGNRIIMG   602  

                   *
                    
     hh05223     -   -    

PF00498.16.ls: domain 1 of 1, from 531 to 602: score 46.7, E = 7.3e-11
                   *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf
                      +++GR       + ++ qdi+l+g++i  +H++++ ++ g++     
     hh05223   531    TRVGR------EDGERRQDIVLSGhFIKEEHCVFRSDSRGGSEAVV- 570  

                   rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             +l++++++     t+vNgk++  +ep  L+sG++i +G  
     hh05223   571 ----------TLEPCEGAD----TYVNGKKV--TEPSILRSGNRIIMG   602  

                   *
                    
     hh05223     -   -    

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