hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-15520035/chunk_1/iprscan-20090630-15520035.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh05223s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00225.13.ls Kinesin motor domain 617.4 1.2e-182 1 PF00225.13.fs Kinesin motor domain 615.7 3.8e-182 1 PF00169.19.fs PH domain 71.9 2e-21 1 PF00169.19.ls PH domain 73.9 4.7e-19 1 PF00498.16.fs FHA domain 44.9 1.1e-12 1 PF00498.16.ls FHA domain 46.7 7.3e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00225.13.ls 1/1 17 361 .. 1 424 [] 617.4 1.2e-182 PF00225.13.fs 1/1 17 361 .. 1 424 [] 615.7 3.8e-182 PF00498.16.fs 1/1 531 602 .. 1 94 [] 44.9 1.1e-12 PF00498.16.ls 1/1 531 602 .. 1 94 [] 46.7 7.3e-11 PF00169.19.fs 1/1 1683 1780 .. 1 92 [] 71.9 2e-21 PF00169.19.ls 1/1 1683 1780 .. 1 92 [] 73.9 4.7e-19 Alignments of top-scoring domains: PF00225.13.ls: domain 1 of 1, from 17 to 361: score 617.4, E = 1.2e-182 *->RvRPlnerEksrgssdvvnv..sedvessvitn.gkektFtFDkVFd RvRP+n+rE sr+s++++++++s ++++++++ ++++k+F+FD+ ++ hh05223s1 17 RVRPFNSREMSRDSKCIIQMsgSTTTIVNPKQPkETPKSFSFDYSYW 63 peatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKT ++++ e+++YAsq++vy++++++++++++eGyNv+IFAYGQTG+GK+ hh05223s1 64 SHTSP---EdInYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 110 YTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpv YTM+G+ + +++ GiiP +edlF+ri++++ + hh05223s1 111 YTMMGKQE---------------KDQQGIIPQLCEDLFSRINDTTND--- 142 fKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIY ++++sv+vSy+EIY hh05223s1 143 ------------------------------------NMSYSVEVSYMEIY 156 NEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGL +E++rDLL+p+ +k + Lr+re+p G +yV++L hh05223s1 157 CERVRDLLNPK-------------NKGN-LRVREHPLLG-----PYVEDL 187 teveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntd + Vts++++++l++ Gnk Rtva+T+mNe+SSRSHa+F i+ +q+++d hh05223s1 188 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHD 237 ttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaa ++++++t+ +vsk++LVDLAGSERa+ Tg A g RLkE+a hh05223s1 238 AETNITTE---------KVSKISLVDLAGSERADSTG---AKGTRLKEGA 275 nINkSLsaLGnVInALadnq..........kssHiPYRDSKLTrLLQDSL nINkSL +LG+VI+ALa+ ++++++++++k ++iPYRDS+LT+LL++ L hh05223s1 276 NINKSLTTLGKVISALAEMDsgpnknkkkkKTDFIPYRDSVLTWLLRENL 325 GGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* GG Ns+T+M+a +SP++ ny+ETLsTLr+A+RAK+I+ hh05223s1 326 GG--NSRTAMVAALSPADI----NYDETLSTLRYADRAKQIR 361 PF00225.13.fs: domain 1 of 1, from 17 to 361: score 615.7, E = 3.8e-182 *->RvRPlnerEksrgssdvvnv..sedvessvitn.gkektFtFDkVFd RvRP+n+rE sr+s++++++++s ++++++++ ++++k+F+FD+ ++ hh05223s1 17 RVRPFNSREMSRDSKCIIQMsgSTTTIVNPKQPkETPKSFSFDYSYW 63 peatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKT ++++ e+++YAsq++vy++++++++++++eGyNv+IFAYGQTG+GK+ hh05223s1 64 SHTSP---EdInYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 110 YTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpv YTM+G+ + +++ GiiP +edlF+ri++++ + hh05223s1 111 YTMMGKQE---------------KDQQGIIPQLCEDLFSRINDTTND--- 142 fKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIY ++++sv+vSy+EIY hh05223s1 143 ------------------------------------NMSYSVEVSYMEIY 156 NEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGL +E++rDLL+p+ +k + Lr+re+p G +yV++L hh05223s1 157 CERVRDLLNPK-------------NKGN-LRVREHPLLG-----PYVEDL 187 teveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntd + Vts++++++l++ Gnk Rtva+T+mNe+SSRSHa+F i+ +q+++d hh05223s1 188 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHD 237 ttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaa ++++++t+ +vsk++LVDLAGSERa+ Tg A g RLkE+a hh05223s1 238 AETNITTE---------KVSKISLVDLAGSERADSTG---AKGTRLKEGA 275 nINkSLsaLGnVInALadnq..........kssHiPYRDSKLTrLLQDSL nINkSL +LG+VI+ALa+ ++++++++++k ++iPYRDS+LT+LL++ L hh05223s1 276 NINKSLTTLGKVISALAEMDsgpnknkkkkKTDFIPYRDSVLTWLLRENL 325 GGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* GG Ns+T+M+a +SP++ ny+ETLsTLr+A+RAK+I+ hh05223s1 326 GG--NSRTAMVAALSPADI----NYDETLSTLRYADRAKQIR 361 PF00498.16.fs: domain 1 of 1, from 531 to 602: score 44.9, E = 1.1e-12 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf +++GR + ++ qdi+l+g++i +H++++ ++ g++ hh05223s1 531 TRVGR------EDGERRQDIVLSGhFIKEEHCVFRSDSRGGSEAVV- 570 rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<- +l++++++ t+vNgk++ +ep L+sG++i +G hh05223s1 571 ----------TLEPCEGAD----TYVNGKKV--TEPSILRSGNRIIMG 602 * hh05223s1 - - PF00498.16.ls: domain 1 of 1, from 531 to 602: score 46.7, E = 7.3e-11 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf +++GR + ++ qdi+l+g++i +H++++ ++ g++ hh05223s1 531 TRVGR------EDGERRQDIVLSGhFIKEEHCVFRSDSRGGSEAVV- 570 rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<- +l++++++ t+vNgk++ +ep L+sG++i +G hh05223s1 571 ----------TLEPCEGAD----TYVNGKKV--TEPSILRSGNRIIMG 602 * hh05223s1 - - PF00169.19.fs: domain 1 of 1, from 1683 to 1780: score 71.9, E = 2e-21 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs v k+G+L+ ++ ++w +R++v+++ + ++y ++k+ +++++L hh05223s1 1683 VSKKGYLHFLEpHTSGWARRFVVVRRPYAYMYNSDKdTVERFVLNLA 1729 giqvtkvpdn....krkncFeirt.dretlllqaeseeerkeWvkaiqsa ++qv++ +d++ k +n+F + t++r +llqa+s++++++W+ a++ + hh05223s1 1730 TAQVEYSEDQqamlKTPNTFAVCTeHR-GILLQAASDKDMHDWLYAFNPL 1778 ir<-* ++ hh05223s1 1779 LA 1780 PF00169.19.ls: domain 1 of 1, from 1683 to 1780: score 73.9, E = 4.7e-19 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs v k+G+L+ ++ ++w +R++v+++ + ++y ++k+ +++++L hh05223s1 1683 VSKKGYLHFLEpHTSGWARRFVVVRRPYAYMYNSDKdTVERFVLNLA 1729 giqvtkvpdn....krkncFeirt.dretlllqaeseeerkeWvkaiqsa ++qv++ +d++ k +n+F + t++r +llqa+s++++++W+ a++ + hh05223s1 1730 TAQVEYSEDQqamlKTPNTFAVCTeHR-GILLQAASDKDMHDWLYAFNPL 1778 ir<-* ++ hh05223s1 1779 LA 1780 //