hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-15520035/chunk_1/iprscan-20090630-15520035.nocrc
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Query sequence: hh05223s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 605.6   1.7e-177   1
SM00233                                                  57.8    1.4e-12   1
SM00240                                                  42.3    6.3e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1       9   368 ..     1   404 []   605.6 1.7e-177
SM00240     1/1     530   587 ..     1    49 []    42.3  6.3e-08
SM00233     1/1    1683  1782 ..     1    82 []    57.8  1.4e-12

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 9 to 368: score 605.6, E = 1.7e-177
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv....tvtvn...
                        +++VavRv   RP+n rE s+     s++++++++++t++vn+++
   hh05223s1     9    GASVKVAVRV---RPFNSREMSRD----SKCIIQMsgstTTIVNpkq 48   

                   .......FtFDkVFW....rydvddpsasQedVFeevaaPLvdsaldGYN
                   +++++++F+FD+++W+++++  +d  +asQ++V+++++ +++++a++GYN
   hh05223s1    49 pketpksFSFDYSYWshtsP--EDINYASQKQVYRDIGEEMLQHAFEGYN 96   

                   vaTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiIPRaledl
                   v +IFAYGQTG+GK+yTM+G  +              d++GiIP  +edl
   hh05223s1    97 V-CIFAYGQTGAGKSYTMMGKQEK-------------DQQGIIPQLCEDL 132  

                   Fekide.......fsVkvSylEIYNEkirDLLspspenSksrGkhakqss
                   F +i+++++++ ++sV+vSy+EIY+E++rDLL+p++              
   hh05223s1   133 FSRINDttndnmsYSVEVSYMEIYCERVRDLLNPKN-------------- 168  

                   kkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlelle
                   k++Lr+rE++                 g+yV++L+   V+S+ ++ +l++
   hh05223s1   169 KGNLRVREHPL---------------LGPYVEDLSKLAVTSYNDIQDLMD 203  

                   rGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadektesstnegt
                    Gnk RtvaaT+mNe SSRSHa+F i+ +qk+             ++++t
   hh05223s1   204 SGNKARTVAATNMNETSSRSHAVFNIIFTQKRH----------DAETNIT 243  

                   eqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVInA
                   +  k+sk++LVDLAGSERa++Tg  a G RLkE++nINkSL++LG+VI+A
   hh05223s1   244 T-EKVSKISLVDLAGSERADSTG--AKGTRLKEGANINKSLTTLGKVISA 290  

                   Laddshdsaes.eatkqaggkssHIPYRDSKLTrLLQdSLGGNsKTlMIa
                   La+     + s+ + +++++k  +IPYRDS+LT+LL++ LGGNs+T+M+a
   hh05223s1   291 LAE-----MDSgPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVA 335  

                   nvSPsssnyeETlsTLrFAsRaksIknkpavne<-*
                    +SP+++ny+ETlsTLr+A+Rak+I++++++ne   
   hh05223s1   336 ALSPADINYDETLSTLRYADRAKQIRCNAVINE    368  

SM00240: domain 1 of 1, from 530 to 587: score 42.3, E = 6.3e-08
                   *->tvtiGRss....cdivlpspsiSRrHaeiv...dgd.....yliDlg
                       +++GR+ ++++ divl++ +i  +H++++++++g+++    l+++ 
   hh05223s1   530    ITRVGREDgerrQDIVLSGHFIKEEHCVFRsdsRGGseavvTLEPCE 576  

                   enSsNGTfVNgrrv<-*
                       + T+VNg++v   
   hh05223s1   577 ---GADTYVNGKKV    587  

SM00233: domain 1 of 1, from 1683 to 1782: score 57.8, E = 1.4e-12
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk...kpkgsipLs
                      v k+G+L+ ++++ ++w +r++v+++ + + y s++++  + +++L 
   hh05223s1  1683    VSKKGYLHFLEphTsGWARRFVVVRRPYAYMYNSDkdtVERFVLNLA 1729 

                   gcsvre.p..........cFeivt.drtlllqAeseeereeWvealqsai
                   +++v+ +++     + +++F ++t++r +llqA s++++++W+ a++ ++
   hh05223s1  1730 TAQVEYsEdqqamlktpnTFAVCTeHRGILLQAASDKDMHDWLYAFNPLL 1779 

                   aka<-*
                   a     
   hh05223s1  1780 AGT    1782 

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