# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohh05253.fasta.nr -Q hh05253.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hh05253, 870 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6841537 sequences Expectation_n fit: rho(ln(x))= 5.1249+/-0.000186; mu= 13.8637+/- 0.010 mean_var=76.1158+/-14.813, 0's: 37 Z-trim: 42 B-trim: 376 in 2/63 Lambda= 0.147007 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|68533115|dbj|BAE06112.1| SEMA4D variant protein ( 870) 5861 1253.1 0 gi|114625455|ref|XP_001141771.1| PREDICTED: semaph ( 928) 5826 1245.7 0 gi|168270916|dbj|BAG10251.1| semaphorin-4D precurs ( 862) 5798 1239.7 0 gi|8134701|sp|Q92854.1|SEM4D_HUMAN Semaphorin-4D p ( 862) 5793 1238.7 0 gi|32493365|gb|AAH54500.1| Sema domain, immunoglob ( 862) 5784 1236.8 0 gi|109112122|ref|XP_001090890.1| PREDICTED: semaph ( 862) 5721 1223.4 0 gi|119583171|gb|EAW62767.1| hCG1985052, isoform CR ( 853) 5644 1207.1 0 gi|8134689|sp|O09126.1|SEM4D_MOUSE Semaphorin-4D p ( 861) 5033 1077.5 0 gi|49248072|gb|AAH49780.2| Sema domain, immunoglob ( 861) 5022 1075.2 0 gi|194041392|ref|XP_001928494.1| PREDICTED: simila ( 865) 4962 1062.4 0 gi|109504697|ref|XP_225215.4| PREDICTED: similar t ( 860) 4820 1032.3 0 gi|194224945|ref|XP_001493931.2| PREDICTED: simila ( 937) 4725 1012.2 0 gi|73947068|ref|XP_533551.2| PREDICTED: similar to ( 923) 4722 1011.6 0 gi|26353700|dbj|BAC40480.1| unnamed protein produc ( 799) 4694 1005.6 0 gi|74210023|dbj|BAE21302.1| unnamed protein produc ( 814) 4677 1002.0 0 gi|109505501|ref|XP_001053912.1| PREDICTED: simila ( 824) 4615 988.8 0 gi|37927181|pdb|1OLZ|A Chain A, The Ligand-Binding ( 663) 4400 943.1 0 gi|149044998|gb|EDL98084.1| sema domain, immunoglo ( 695) 3997 857.7 0 gi|118104200|ref|XP_424426.2| PREDICTED: similar t ( 845) 3878 832.5 0 gi|119583169|gb|EAW62765.1| hCG1985052, isoform CR ( 687) 3743 803.8 0 gi|119583170|gb|EAW62766.1| hCG1985052, isoform CR ( 738) 3743 803.8 0 gi|146186476|gb|AAI40510.1| SEMA4D protein [Bos ta ( 735) 3362 723.0 9.7e-206 gi|194374551|dbj|BAG57171.1| unnamed protein produ ( 548) 3253 699.8 7e-199 gi|119583172|gb|EAW62768.1| hCG1985052, isoform CR ( 534) 3230 694.9 2e-197 gi|126333806|ref|XP_001375624.1| PREDICTED: simila ( 678) 3142 676.3 1e-191 gi|189442633|gb|AAI67391.1| Unknown (protein for M ( 729) 2647 571.4 4.3e-160 gi|189540169|ref|XP_001921510.1| PREDICTED: simila ( 673) 2431 525.6 2.5e-146 gi|47219866|emb|CAF97136.1| unnamed protein produc ( 835) 2412 521.6 4.8e-145 gi|94732427|emb|CAK04062.1| novel protein similar ( 775) 1868 406.2 2.4e-110 gi|50417869|gb|AAH78280.1| Sema4e protein [Danio r ( 762) 1754 382.0 4.6e-103 gi|8134727|sp|Q9YHX4.1|SEM4E_DANRE Semaphorin-4E p ( 766) 1754 382.0 4.6e-103 gi|134054522|emb|CAM73255.1| sema4e [Danio rerio] ( 766) 1750 381.2 8.2e-103 gi|8134699|sp|Q64151.1|SEM4C_MOUSE Semaphorin-4C p ( 834) 1746 380.4 1.6e-102 gi|148682548|gb|EDL14495.1| mCG17761, isoform CRA_ ( 914) 1746 380.4 1.7e-102 gi|160773680|gb|AAI55169.1| Sema4e protein [Danio ( 766) 1743 379.7 2.3e-102 gi|73970098|ref|XP_538464.2| PREDICTED: similar to ( 849) 1736 378.2 7e-102 gi|126303453|ref|XP_001379915.1| PREDICTED: simila ( 832) 1732 377.4 1.2e-101 gi|149046375|gb|EDL99268.1| sema domain, immunoglo ( 834) 1724 375.7 4e-101 gi|109103896|ref|XP_001100467.1| PREDICTED: semaph ( 833) 1715 373.8 1.5e-100 gi|37182802|gb|AAQ89201.1| SEMA4C [Homo sapiens] ( 833) 1700 370.6 1.4e-99 gi|47606208|sp|Q9C0C4|SEM4C_HUMAN Semaphorin-4C pr ( 833) 1700 370.6 1.4e-99 gi|194671303|ref|XP_604387.4| PREDICTED: similar t ( 833) 1698 370.2 1.8e-99 gi|119591731|gb|EAW71325.1| sema domain, immunoglo ( 886) 1689 368.3 7.2e-99 gi|50415520|gb|AAH78116.1| Unknown (protein for MG ( 834) 1660 362.1 4.9e-97 gi|8134700|sp|Q90665|SEM4D_CHICK Semaphorin-4D (Co ( 295) 1627 354.7 2.9e-95 gi|114579013|ref|XP_515634.2| PREDICTED: semaphori ( 858) 1609 351.3 9e-94 gi|189526148|ref|XP_693092.3| PREDICTED: similar t ( 879) 1557 340.3 1.9e-90 gi|47123219|gb|AAH70859.1| MGC84614 protein [Xenop ( 830) 1544 337.5 1.2e-89 gi|73998651|ref|XP_543973.2| PREDICTED: similar to ( 840) 1527 333.9 1.5e-88 gi|194205755|ref|XP_001916730.1| PREDICTED: sema d ( 844) 1515 331.4 8.9e-88 >>gi|68533115|dbj|BAE06112.1| SEMA4D variant protein [Ho (870 aa) initn: 5861 init1: 5861 opt: 5861 Z-score: 6712.3 bits: 1253.1 E(): 0 Smith-Waterman score: 5861; 100.000% identity (100.000% similar) in 870 aa overlap (1-870:1-870) 10 20 30 40 50 60 hh0525 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA 10 20 30 40 50 60 70 80 90 100 110 120 hh0525 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI 70 80 90 100 110 120 130 140 150 160 170 180 hh0525 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE 130 140 150 160 170 180 190 200 210 220 230 240 hh0525 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY 190 200 210 220 230 240 250 260 270 280 290 300 hh0525 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV 250 260 270 280 290 300 310 320 330 340 350 360 hh0525 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH 310 320 330 340 350 360 370 380 390 400 410 420 hh0525 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR 370 380 390 400 410 420 430 440 450 460 470 480 hh0525 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP 430 440 450 460 470 480 490 500 510 520 530 540 hh0525 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL 490 500 510 520 530 540 550 560 570 580 590 600 hh0525 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG 550 560 570 580 590 600 610 620 630 640 650 660 hh0525 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP 610 620 630 640 650 660 670 680 690 700 710 720 hh0525 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI 670 680 690 700 710 720 730 740 750 760 770 780 hh0525 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL 730 740 750 760 770 780 790 800 810 820 830 840 hh0525 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED 790 800 810 820 830 840 850 860 870 hh0525 SQRIDDLSARDKPFDVKCELKFADSDADGD :::::::::::::::::::::::::::::: gi|685 SQRIDDLSARDKPFDVKCELKFADSDADGD 850 860 870 >>gi|114625455|ref|XP_001141771.1| PREDICTED: semaphorin (928 aa) initn: 5826 init1: 5826 opt: 5826 Z-score: 6671.8 bits: 1245.7 E(): 0 Smith-Waterman score: 5826; 99.425% identity (100.000% similar) in 869 aa overlap (2-870:60-928) 10 20 30 hh0525 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMA :::::::::::::::::::::::::::::: gi|114 RIPQQMDPGEDPGQAEGLQSSEKQVITHHGPWGRLYLMRMCTPIRGLLMALAVMFGTAMA 30 40 50 60 70 80 40 50 60 70 80 90 hh0525 FAPIPRITWEHREVHLVQFHEPDIYNYSALLLSEDKDTLYIGAREAVFAVNALNISEKQH ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|114 FAPIPRITWEHREVRLVQFHEPDIYNYSALLLSEDKDTLYIGAREAVFAVNALNISEKQH 90 100 110 120 130 140 100 110 120 130 140 150 hh0525 EVYWKVSEDKKAKCAEKGKSKQTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EVYWKVSEDKKAKCAEKGKSKQTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSF 150 160 170 180 190 200 160 170 180 190 200 210 hh0525 KFLGKNEDGKGRCPFDPAHSYTSVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KFLGKNEDGKGRCPFDPAHSYTSVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAI 210 220 230 240 250 260 220 230 240 250 260 270 hh0525 PWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGG 270 280 290 300 310 320 280 290 300 310 320 330 hh0525 LRTLQKKWTSFLKARLICSRPDSGLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LRTLQKKWTSFLKARLICSRPDSGLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLS 330 340 350 360 370 380 340 350 360 370 380 390 hh0525 AVCTYNLSTAEEVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSS :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AVCAYNLSTAEEVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSS 390 400 410 420 430 440 400 410 420 430 440 450 hh0525 LNLPDKTLQFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVST ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|114 LNLPDKTLQFVKDHPLMDDSVTPIDNRPRLIKKDMNYTQIVVDRTQALDGTVYDVMFVST 450 460 470 480 490 500 460 470 480 490 500 510 hh0525 DRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLAFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLAFC 510 520 530 540 550 560 520 530 540 550 560 570 hh0525 GKHGTCEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQ :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|114 GKHGTCEDCVLARDPYCAWNPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQ 570 580 590 600 610 620 580 590 600 610 620 630 hh0525 HFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 HFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQ 630 640 650 660 670 680 640 650 660 670 680 690 hh0525 CLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTQGSSPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 CLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTQGSSPP 690 700 710 720 730 740 700 710 720 730 740 750 hh0525 TPAVQATSSGAITLPPKPAPTGTSCEPKIVINTVPQLHSEKTMYLKSSDNRLLMSLFLFF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|114 TPAVQATSSGAITLPPKPAPTGTSCEPKIVINTVPQLHSEKTMYLKSSDNRLLMSLFLLF 750 760 770 780 790 800 760 770 780 790 800 810 hh0525 FVLFLCLFFYNCYKGYLPRQCLKFRSALLIGKKKPKSDFCDREQSLKETLVEPGSFSQQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FVLFLCLFFYNCYKGYLPRQCLKFRSALLIGKKKPKSDFCDREQSLKETLVEPGSFSQQN 810 820 830 840 850 860 820 830 840 850 860 870 hh0525 GEHPKPALDTGYETEQDTITSKVPTDREDSQRIDDLSARDKPFDVKCELKFADSDADGD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GEHPKPALDTGYETEQDTITSKVPTDREDSQRIDDLSARDKPFDVKCELKFADSDADGD 870 880 890 900 910 920 >>gi|168270916|dbj|BAG10251.1| semaphorin-4D precursor [ (862 aa) initn: 5798 init1: 5798 opt: 5798 Z-score: 6640.1 bits: 1239.7 E(): 0 Smith-Waterman score: 5798; 100.000% identity (100.000% similar) in 862 aa overlap (9-870:1-862) 10 20 30 40 50 60 hh0525 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA 10 20 30 40 50 70 80 90 100 110 120 hh0525 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI 60 70 80 90 100 110 130 140 150 160 170 180 hh0525 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE 120 130 140 150 160 170 190 200 210 220 230 240 hh0525 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY 180 190 200 210 220 230 250 260 270 280 290 300 hh0525 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV 240 250 260 270 280 290 310 320 330 340 350 360 hh0525 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH 300 310 320 330 340 350 370 380 390 400 410 420 hh0525 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR 360 370 380 390 400 410 430 440 450 460 470 480 hh0525 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP 420 430 440 450 460 470 490 500 510 520 530 540 hh0525 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL 480 490 500 510 520 530 550 560 570 580 590 600 hh0525 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG 540 550 560 570 580 590 610 620 630 640 650 660 hh0525 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP 600 610 620 630 640 650 670 680 690 700 710 720 hh0525 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI 660 670 680 690 700 710 730 740 750 760 770 780 hh0525 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL 720 730 740 750 760 770 790 800 810 820 830 840 hh0525 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED 780 790 800 810 820 830 850 860 870 hh0525 SQRIDDLSARDKPFDVKCELKFADSDADGD :::::::::::::::::::::::::::::: gi|168 SQRIDDLSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|8134701|sp|Q92854.1|SEM4D_HUMAN Semaphorin-4D precu (862 aa) initn: 5793 init1: 5793 opt: 5793 Z-score: 6634.4 bits: 1238.7 E(): 0 Smith-Waterman score: 5793; 99.884% identity (100.000% similar) in 862 aa overlap (9-870:1-862) 10 20 30 40 50 60 hh0525 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA 10 20 30 40 50 70 80 90 100 110 120 hh0525 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI 60 70 80 90 100 110 130 140 150 160 170 180 hh0525 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE 120 130 140 150 160 170 190 200 210 220 230 240 hh0525 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY 180 190 200 210 220 230 250 260 270 280 290 300 hh0525 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV 240 250 260 270 280 290 310 320 330 340 350 360 hh0525 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|813 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYMQSTTVEQSH 300 310 320 330 340 350 370 380 390 400 410 420 hh0525 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR 360 370 380 390 400 410 430 440 450 460 470 480 hh0525 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP 420 430 440 450 460 470 490 500 510 520 530 540 hh0525 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL 480 490 500 510 520 530 550 560 570 580 590 600 hh0525 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG 540 550 560 570 580 590 610 620 630 640 650 660 hh0525 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP 600 610 620 630 640 650 670 680 690 700 710 720 hh0525 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI 660 670 680 690 700 710 730 740 750 760 770 780 hh0525 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL 720 730 740 750 760 770 790 800 810 820 830 840 hh0525 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED 780 790 800 810 820 830 850 860 870 hh0525 SQRIDDLSARDKPFDVKCELKFADSDADGD :::::::::::::::::::::::::::::: gi|813 SQRIDDLSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|32493365|gb|AAH54500.1| Sema domain, immunoglobulin (862 aa) initn: 5784 init1: 5784 opt: 5784 Z-score: 6624.1 bits: 1236.8 E(): 0 Smith-Waterman score: 5784; 99.768% identity (99.884% similar) in 862 aa overlap (9-870:1-862) 10 20 30 40 50 60 hh0525 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA 10 20 30 40 50 70 80 90 100 110 120 hh0525 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI 60 70 80 90 100 110 130 140 150 160 170 180 hh0525 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE 120 130 140 150 160 170 190 200 210 220 230 240 hh0525 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY 180 190 200 210 220 230 250 260 270 280 290 300 hh0525 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV 240 250 260 270 280 290 310 320 330 340 350 360 hh0525 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|324 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYMQSTTVEQSH 300 310 320 330 340 350 370 380 390 400 410 420 hh0525 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR 360 370 380 390 400 410 430 440 450 460 470 480 hh0525 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP 420 430 440 450 460 470 490 500 510 520 530 540 hh0525 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL 480 490 500 510 520 530 550 560 570 580 590 600 hh0525 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQND 540 550 560 570 580 590 610 620 630 640 650 660 hh0525 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP 600 610 620 630 640 650 670 680 690 700 710 720 hh0525 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI 660 670 680 690 700 710 730 740 750 760 770 780 hh0525 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL 720 730 740 750 760 770 790 800 810 820 830 840 hh0525 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED 780 790 800 810 820 830 850 860 870 hh0525 SQRIDDLSARDKPFDVKCELKFADSDADGD :::::::::::::::::::::::::::::: gi|324 SQRIDDLSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|109112122|ref|XP_001090890.1| PREDICTED: semaphorin (862 aa) initn: 5721 init1: 5721 opt: 5721 Z-score: 6551.8 bits: 1223.4 E(): 0 Smith-Waterman score: 5721; 98.840% identity (99.652% similar) in 862 aa overlap (9-870:1-862) 10 20 30 40 50 60 hh0525 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA :::: ::::::::::::::::::::::::::::::::.:::::::::::::: gi|109 MRMCIPIRGLLMALAVMFGTAMAFAPIPRITWEHREVRLVQFHEPDIYNYSA 10 20 30 40 50 70 80 90 100 110 120 hh0525 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI 60 70 80 90 100 110 130 140 150 160 170 180 hh0525 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE 120 130 140 150 160 170 190 200 210 220 230 240 hh0525 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY 180 190 200 210 220 230 250 260 270 280 290 300 hh0525 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|109 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSSLVFNV 240 250 260 270 280 290 310 320 330 340 350 360 hh0525 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH ::::::::::::::::::::::::::::::::::.::::::::::::::::::.:::::: gi|109 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYMQSATVEQSH 300 310 320 330 340 350 370 380 390 400 410 420 hh0525 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR 360 370 380 390 400 410 430 440 450 460 470 480 hh0525 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP 420 430 440 450 460 470 490 500 510 520 530 540 hh0525 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VQTLLLSSKKGRRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL 480 490 500 510 520 530 550 560 570 580 590 600 hh0525 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG 540 550 560 570 580 590 610 620 630 640 650 660 hh0525 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP 600 610 620 630 640 650 670 680 690 700 710 720 hh0525 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI :::::::::::::::::::::::::::::: ::::::::::::::::::.::.::::::: gi|109 VVAPTLSVVQTEGSRIATKVLVASTQGSSPLTPAVQATSSGAITLPPKPVPTSTSCEPKI 660 670 680 690 700 710 730 740 750 760 770 780 hh0525 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL 720 730 740 750 760 770 790 800 810 820 830 840 hh0525 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED 780 790 800 810 820 830 850 860 870 hh0525 SQRIDDLSARDKPFDVKCELKFADSDADGD :::::::::::::::::::::::::::::: gi|109 SQRIDDLSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|119583171|gb|EAW62767.1| hCG1985052, isoform CRA_c (853 aa) initn: 5644 init1: 5644 opt: 5644 Z-score: 6463.7 bits: 1207.1 E(): 0 Smith-Waterman score: 5644; 99.762% identity (100.000% similar) in 842 aa overlap (9-850:1-842) 10 20 30 40 50 60 hh0525 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA 10 20 30 40 50 70 80 90 100 110 120 hh0525 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|119 LLLSEDKDTLYIGAREAVFTVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI 60 70 80 90 100 110 130 140 150 160 170 180 hh0525 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE 120 130 140 150 160 170 190 200 210 220 230 240 hh0525 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY 180 190 200 210 220 230 250 260 270 280 290 300 hh0525 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV 240 250 260 270 280 290 310 320 330 340 350 360 hh0525 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|119 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYMQSTTVEQSH 300 310 320 330 340 350 370 380 390 400 410 420 hh0525 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR 360 370 380 390 400 410 430 440 450 460 470 480 hh0525 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP 420 430 440 450 460 470 490 500 510 520 530 540 hh0525 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL 480 490 500 510 520 530 550 560 570 580 590 600 hh0525 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG 540 550 560 570 580 590 610 620 630 640 650 660 hh0525 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP 600 610 620 630 640 650 670 680 690 700 710 720 hh0525 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI 660 670 680 690 700 710 730 740 750 760 770 780 hh0525 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL 720 730 740 750 760 770 790 800 810 820 830 840 hh0525 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED 780 790 800 810 820 830 850 860 870 hh0525 SQRIDDLSARDKPFDVKCELKFADSDADGD :::::::::: gi|119 SQRIDDLSARXXXXXXXXQAL 840 850 >>gi|8134689|sp|O09126.1|SEM4D_MOUSE Semaphorin-4D precu (861 aa) initn: 4063 init1: 4063 opt: 5033 Z-score: 5763.3 bits: 1077.5 E(): 0 Smith-Waterman score: 5033; 85.499% identity (94.432% similar) in 862 aa overlap (9-870:1-861) 10 20 30 40 50 60 hh0525 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA ::::.:.:::..::.:.. ::.::::.::.:::: :: :::::.: :.:::: gi|813 MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSA 10 20 30 40 50 70 80 90 100 110 120 hh0525 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI ::.::::::::.::::::::::::::::::::::::::::::.::::::::::::::::: gi|813 LLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYI 60 70 80 90 100 110 130 140 150 160 170 180 hh0525 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE :::::::.:::::::::::::.::::::::::::::.:::::::::::::::::::: :: gi|813 RVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGE 120 130 140 150 160 170 190 200 210 220 230 240 hh0525 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY :::::::::::::::::::::::::::::::::::::::::::::.::::.:.::::.:: gi|813 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVY 180 190 200 210 220 230 250 260 270 280 290 300 hh0525 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV ::::::::::::::...:::.:::::::::::::::::::::::::::::.::::::::. gi|813 FFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNI 240 250 260 270 280 290 310 320 330 340 350 360 hh0525 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH :.::::::.:::: :::::.::::::::::::::.:.:.:.: :::.::::::.:::::: gi|813 LQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSH 300 310 320 330 340 350 370 380 390 400 410 420 hh0525 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::. gi|813 TKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPK 360 370 380 390 400 410 430 440 450 460 470 480 hh0525 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP :::::::::::::::::::::: :::::.::::::::::. : . ::.:::::::.:::: gi|813 LIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDFEP 420 430 440 450 460 470 490 500 510 520 530 540 hh0525 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL : ::::::::: .:::::::::::::::::: :::.:::::::::::::::: .::.: gi|813 VLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTL 480 490 500 510 520 530 550 560 570 580 590 600 hh0525 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG :: :. ::: ::.::::.: : :::: :. :::::::::::::: :::::::: :::::: gi|813 HQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNG 540 550 560 570 580 590 610 620 630 640 650 660 hh0525 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP ::: :::::..:::.:::::::.::::::::::::::.:::: :..::::::::.::. gi|813 ELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRT 600 610 620 630 640 650 670 680 690 700 710 720 hh0525 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI .:: ::::::.:..:. :.:::::::::::. ::: : ::::: . .:::::::. gi|813 PPSPTSEDVQTEGSKITSKMPVGSTQGSSPPTPALWATSPRAATLPPK-SSSGTSCEPKM 660 670 680 690 700 710 730 740 750 760 770 780 hh0525 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL :::::::::::::.:::::::::::::.::.:::::::: ::::::::: :::::::::: gi|813 VINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALL 720 730 740 750 760 770 790 800 810 820 830 840 hh0525 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED .::: ::::: : :::.:::::::::::::::.::::::::::::::::::::::::::: gi|813 LGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDRED 780 790 800 810 820 830 850 860 870 hh0525 SQRIDDLSARDKPFDVKCELKFADSDADGD :::::.:::::::::::::::::::::::: gi|813 SQRIDELSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|49248072|gb|AAH49780.2| Sema domain, immunoglobulin (861 aa) initn: 4052 init1: 4052 opt: 5022 Z-score: 5750.7 bits: 1075.2 E(): 0 Smith-Waterman score: 5022; 85.383% identity (94.316% similar) in 862 aa overlap (9-870:1-861) 10 20 30 40 50 60 hh0525 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA ::::.:.:::..::.:.. ::.::::.::.:::: :: :::::.: :.:::: gi|492 MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSA 10 20 30 40 50 70 80 90 100 110 120 hh0525 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI ::.::::::::.::::::::::::::::::::::::::::::.::::::::::::::::: gi|492 LLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYI 60 70 80 90 100 110 130 140 150 160 170 180 hh0525 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE :::::::.:::::::::::::.::::::::::::::.:::::::::::::::::::: :: gi|492 RVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGE 120 130 140 150 160 170 190 200 210 220 230 240 hh0525 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY :::::::::::::::::::::::::::::::::::::::::::::.::::.:.::::.:: gi|492 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVY 180 190 200 210 220 230 250 260 270 280 290 300 hh0525 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV ::::::::::::::...:::.:::::::::::::::::::::::::::::.::::::::. gi|492 FFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNI 240 250 260 270 280 290 310 320 330 340 350 360 hh0525 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH :.::::::.:::: :::::.::::::::::::::.:.:.:.: :::.::::::.:::::: gi|492 LQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSH 300 310 320 330 340 350 370 380 390 400 410 420 hh0525 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::. gi|492 TKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPK 360 370 380 390 400 410 430 440 450 460 470 480 hh0525 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP :::::::::::::::::::::: :::::.::::::::::. : . ::.:::::::.: :: gi|492 LIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEP 420 430 440 450 460 470 490 500 510 520 530 540 hh0525 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL : ::::::::: .:::::::::::::::::: :::.:::::::::::::::: .::.: gi|492 VLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTL 480 490 500 510 520 530 550 560 570 580 590 600 hh0525 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG :: :. ::: ::.::::.: : :::: :. :::::::::::::: :::::::: :::::: gi|492 HQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNG 540 550 560 570 580 590 610 620 630 640 650 660 hh0525 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP ::: :::::..:::.:::::::.::::::::::::::.:::: :..::::::::.::. gi|492 ELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRT 600 610 620 630 640 650 670 680 690 700 710 720 hh0525 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI .:: .:::::.:..:. :::::::::::::. ::: : ::::: . .:::::::. gi|492 PPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPK-SSSGTSCEPKM 660 670 680 690 700 710 730 740 750 760 770 780 hh0525 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL :::::::::::::.:::::::::::::.::.:::::::: ::::::::: :::::::::: gi|492 VINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALL 720 730 740 750 760 770 790 800 810 820 830 840 hh0525 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED .::: ::::: : :::.:::::::::::::::.::::::::::::::::::::::::::: gi|492 LGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDRED 780 790 800 810 820 830 850 860 870 hh0525 SQRIDDLSARDKPFDVKCELKFADSDADGD :::::.:::::::::::::::::::::::: gi|492 SQRIDELSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|194041392|ref|XP_001928494.1| PREDICTED: similar to (865 aa) initn: 4971 init1: 4059 opt: 4962 Z-score: 5681.9 bits: 1062.4 E(): 0 Smith-Waterman score: 4962; 85.052% identity (94.322% similar) in 863 aa overlap (9-870:1-863) 10 20 30 40 50 60 hh0525 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA ::: .:. :: ::::.::::.:::::::::::::::.::::::: : :::: gi|194 MRMRSPVWRLLTALAVVFGTAVAFAPIPRITWEHREVQLVQFHEPGISNYSA 10 20 30 40 50 70 80 90 100 110 120 hh0525 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI :::::::::::.::::::::.:: :::.:::::::::::::::::::::::::::::::: gi|194 LLLSEDKDTLYVGAREAVFALNAHNISRKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI 60 70 80 90 100 110 130 140 150 160 170 180 hh0525 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE ::::::::..:::::::::::.::::::::: :::::::::::::::::.:::::::::: gi|194 RVLQPLSASALYVCGTNAFQPTCDHLNLTSFAFLGKNEDGKGRCPFDPAQSYTSVMVDGE 120 130 140 150 160 170 190 200 210 220 230 240 hh0525 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY ::::::::::::::::::::::::::::::::::::::::::::.:.:: . : ::::: gi|194 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVMRESPGGGGGGDDRVY 180 190 200 210 220 230 250 260 270 280 290 300 hh0525 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV ::::::::::::::..::::.:::::::::::::::::::::::::::::::::.::::: gi|194 FFFTEVSVEYEFVFKLLIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSNLVFNV 240 250 260 270 280 290 310 320 330 340 350 360 hh0525 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH :::::::::: :: ::::..::::::::::::::.::::::: :::.::::::.:::::: gi|194 LRDVFVLRSPDLKEPVFYGVFTPQLNNVGLSAVCAYNLSTAEAVFSRGKYMQSATVEQSH 300 310 320 330 340 350 370 380 390 400 410 420 hh0525 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR :::::::: :: ::::::: ::::::..:::::::::::::::::::::::::::.::: gi|194 TKWVRYNGAVPTPRPGACITREARAANFSSSLNLPDKTLQFVKDHPLMDDSVTPIDGRPR 360 370 380 390 400 410 430 440 450 460 470 480 hh0525 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP :::.:::::::::::: ::::::.::::::::::::::::::...::::::::::::::: gi|194 LIKSDVNYTQIVVDRTWALDGTVHDVMFVSTDRGALHKAISLDNSVHIIEETQLFQDFEP 420 430 440 450 460 470 490 500 510 520 530 540 hh0525 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL :::::::::.: .::::::::::::::::::::::::.:::::::::::::: ::.:..: gi|194 VQTLLLSSKEGRKFVYAGSNSGVVQAPLAFCGKHGTCQDCVLARDPYCAWSPATAACITL 480 490 500 510 520 530 550 560 570 580 590 600 hh0525 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG :::. :::::::::.::::.:::: : ::::::::::.::::::::::::::: :::::: gi|194 HQTDRPSRGLIQEMNGDASACPDKIKESYRQHFFKHGSTAELKCSQKSNLARVVWKFQNG 540 550 560 570 580 590 610 620 630 640 650 660 hh0525 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP :::::::::.:.:::::::::::::::::: ::::::::::::.::::::::::..::. gi|194 VLKAESPKYSLVGRKNLLIFNLSEGDSGVYLCLSEERVKNKTVLQVVAKHVLEVRTVPRT 600 610 620 630 640 650 670 680 690 700 710 hh0525 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKP-APTGTSCEPK ..: : ..:::: .:...: :. ::.: : ::::..:. :::. : .: :::.:::::: gi|194 LAASTSPATQTEGRKITSRVSVGFTQSSPPQTPAVRVTTPGAIAPPSSPEAPTSTSCEPK 660 670 680 690 700 710 720 730 740 750 760 770 hh0525 IVINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSAL ::::::::.::::::::::.:::::: :::::::.::::: ::::::::: ::::::::. gi|194 IVINTVPQVHSEKTMYLKSGDNRLLMFLFLFFFVVFLCLFSYNCYKGYLPGQCLKFRSAV 720 730 740 750 760 770 780 790 800 810 820 830 hh0525 LIGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRE :.::::: .:: : :::.:::::: :::::::: .:::::::::::::::..:..::::: gi|194 LLGKKKPTADFSDCEQSVKETLVEQGSFSQQNGGQPKPALDTGYETEQDTMASRLPTDRE 780 790 800 810 820 830 840 850 860 870 hh0525 DSQRIDDLSARDKPFDVKCELKFADSDADGD ::::::.: .::.::::::::::::::::.: gi|194 DSQRIDELPVRDRPFDVKCELKFADSDADADGD 840 850 860 870 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 09:09:26 2008 done: Tue Aug 12 09:11:25 2008 Total Scan time: 1025.430 Total Display time: 0.480 Function used was FASTA [version 34.26.5 April 26, 2007]