hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-09112705/chunk_1/iprscan-20080812-09112705.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh05253 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01403.10.ls Sema domain 705.4 3.8e-209 1 PF01403.10.fs Sema domain 703.4 1.5e-208 1 PF01437.15.fs Plexin repeat 52.7 1.2e-16 1 PF01437.15.ls Plexin repeat 54.5 3.2e-13 1 PF00047.15.fs Immunoglobulin domain 26.2 2e-06 1 PF00047.15.ls Immunoglobulin domain 28.0 3.1e-05 1 PF07686.7.ls Immunoglobulin V-set domain 10.5 0.0043 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.ls 1/1 58 490 .. 1 490 [] 705.4 3.8e-209 PF01403.10.fs 1/1 58 490 .. 1 490 [] 703.4 1.5e-208 PF01437.15.fs 1/1 510 562 .. 1 63 [] 52.7 1.2e-16 PF01437.15.ls 1/1 510 562 .. 1 63 [] 54.5 3.2e-13 PF07686.7.ls 1/1 557 655 .. 1 141 [] 10.5 0.0043 PF00047.15.fs 1/1 577 634 .. 1 65 [] 26.2 2e-06 PF00047.15.ls 1/1 577 634 .. 1 65 [] 28.0 3.1e-05 Alignments of top-scoring domains: PF01403.10.ls: domain 1 of 1, from 58 to 490: score 705.4, E = 3.8e-209 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek +++lll+ed+++Ly+GAr++v+++n ++se q++++W++s e+k hh05253 58 YSALLLSEDKDTLYIGAREAVFAVNALNISEK-QHEVYWKVS--EDK 101 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl + +C+ kGks+ +teC N+irVLqp ++t LyvCGTnaFqP C ++nl hh05253 102 KAKCAEKGKSK---QTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNL 148 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL ++ F++ +k+e+GkgrCP+dP+h++tsv+v + geL hh05253 149 TS-------------FKF-LGKNEDGKGRCPFDPAHSYTSVMV-D--GEL 181 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy YsGt+++ F+G++p+I R sh+plrTe+ wlneP+FV ++ hh05253 182 YSGTSYN------FLGSEPIISRNS-SHSPLRTEY-AIPWLNEPSFVFAD 223 pipyvhsf...dDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGr +i ++++ ++++Dd VYFFF+E +vey+ +++++ ++R+aRvCk+D+GG hh05253 224 VIRKSPDSpdgEDDRVYFFFTEVSVEYE-FVFRVLIPRIARVCKGDQGGL 272 rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL r+l+ +kWT+FLKARL+CS+p+ + +FN+L++vf+l++++ hh05253 273 RTLQ-KKWTSFLKARLICSRPD--S-G-LVFNVLRDVFVLRSPGL----- 312 gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs + pv+Y++Ft + n ++ SAVC++++s+ ++vF+ G++++ hh05253 313 ----KVPVFYALFTPQLNNVGL----SAVCTYNLSTAEEVFSHGKYMQST 354 s.EgpnskwlpyrglkvPyPRPGqCpndssgp.nytStkdlPDdtlnfik + E++++kw++y+g +vP+PRPG C+ + ++ nytS+++lPD+tl+f+k hh05253 355 TvEQSHTKWVRYNG-PVPKPRPGACIDSEARAaNYTSSLNLPDKTLQFVK 403 shpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlG +hpLmd++v+P+ nrP +++++vny TqI+Vd r +a+dG+ Y+V+F++ hh05253 404 DHPLMDDSVTPIDNRPRLIKKDVNY--TQIVVD-RTQALDGTVYDVMFVS 450 TddGtvlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq< Td+G ++ k+++l + + + ++ee+q+f+d ePvq+l++ssk+ hh05253 451 TDRGALH-KAISL--EHAvH----IIEETQLFQDF--EPVQTLLLSSKK 490 -* hh05253 - - PF01403.10.fs: domain 1 of 1, from 58 to 490: score 703.4, E = 1.5e-208 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek +++lll+ed+++Ly+GAr++v+++n ++se q++++W++s e+k hh05253 58 YSALLLSEDKDTLYIGAREAVFAVNALNISEK-QHEVYWKVS--EDK 101 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl + +C+ kGks+ +teC N+irVLqp ++t LyvCGTnaFqP C ++nl hh05253 102 KAKCAEKGKSK---QTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNL 148 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL ++ F++ +k+e+GkgrCP+dP+h++tsv+v + geL hh05253 149 TS-------------FKF-LGKNEDGKGRCPFDPAHSYTSVMV-D--GEL 181 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy YsGt+++ F+G++p+I R sh+plrTe+ wlneP+FV ++ hh05253 182 YSGTSYN------FLGSEPIISRNS-SHSPLRTEY-AIPWLNEPSFVFAD 223 pipyvhsf...dDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGr +i ++++ ++++Dd VYFFF+E +vey+ +++++ ++R+aRvCk+D+GG hh05253 224 VIRKSPDSpdgEDDRVYFFFTEVSVEYE-FVFRVLIPRIARVCKGDQGGL 272 rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL r+l+ +kWT+FLKARL+CS+p+ + +FN+L++vf+l++++ hh05253 273 RTLQ-KKWTSFLKARLICSRPD--S-G-LVFNVLRDVFVLRSPGL----- 312 gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs + pv+Y++Ft + n ++ SAVC++++s+ ++vF+ G++++ hh05253 313 ----KVPVFYALFTPQLNNVGL----SAVCTYNLSTAEEVFSHGKYMQST 354 s.EgpnskwlpyrglkvPyPRPGqCpndssgp.nytStkdlPDdtlnfik + E++++kw++y+g +vP+PRPG C+ + ++ nytS+++lPD+tl+f+k hh05253 355 TvEQSHTKWVRYNG-PVPKPRPGACIDSEARAaNYTSSLNLPDKTLQFVK 403 shpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlG +hpLmd++v+P+ nrP +++++vny TqI+Vd r +a+dG+ Y+V+F++ hh05253 404 DHPLMDDSVTPIDNRPRLIKKDVNY--TQIVVD-RTQALDGTVYDVMFVS 450 TddGtvlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq< Td+G ++ k+++l + + + ++ee+q+f+d ePvq+l++ssk+ hh05253 451 TDRGALH-KAISL--EHAvH----IIEETQLFQDF--EPVQTLLLSSKK 490 -* hh05253 - - PF01437.15.fs: domain 1 of 1, from 510 to 562: score 52.7, E = 1.2e-16 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprsep C+ +++C +C++ardp yC+W + + +C+ ++++ e+p+ hh05253 510 FCGKHGTCEDCVLARDP-YCAWSPPTATCVALHQT-----ESPSRG- 549 endqwldwswssskCp<-* ++++s + s Cp hh05253 550 ---LIQEMSGDASVCP 562 PF01437.15.ls: domain 1 of 1, from 510 to 562: score 54.5, E = 3.2e-13 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprsep C+ +++C +C++ardp yC+W + + +C+ ++++ e+p+ hh05253 510 FCGKHGTCEDCVLARDP-YCAWSPPTATCVALHQT-----ESPSRG- 549 endqwldwswssskCp<-* ++++s + s Cp hh05253 550 ---LIQEMSGDASVCP 562 PF07686.7.ls: domain 1 of 1, from 557 to 655: score 10.5, E = 0.0043 *->qsqvtqepprWGLLLASLfWpt......svtvaeGgsvtLpCtysGt + +v++ ++ ++++ +++ + + Gg+++L+C+++ hh05253 557 DASVCP--DK-----------SkgsyrqH-FFKHGGTAELKCSQK-- 587 fddsssssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfk s + +++W + q+ + + ++ + hh05253 588 ---S----NLARVFWKF-QNG-------------VLKAE----SPKYGLM 612 grvtlsgnpskgdfsLtIsnlqlsDsGtYyCavsns....nelvfgggtr gr L I nl+ DsG+Y C + +++ + + + hh05253 613 GRKN-----------LLIFNLSEGDSGVYQCLSEERvknkTVFQVVAKHV 651 LtVl<-* L V+ hh05253 652 LEVK 655 PF00047.15.fs: domain 1 of 1, from 577 to 634: score 26.2, E = 2e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L Cs + ++v+W+++++ l + + + + + hh05253 577 GGTAELKCSQ---KSNLARVFWKFQNGvLKaESPKYGLMGRKN---- 616 tsLtitnvtpeDggtYtCvv<-* L i n++++D+g+Y C hh05253 617 --LLIFNLSEGDSGVYQCLS 634 PF00047.15.ls: domain 1 of 1, from 577 to 634: score 28.0, E = 3.1e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L Cs + ++v+W+++++ l + + + + + hh05253 577 GGTAELKCSQ---KSNLARVFWKFQNGvLKaESPKYGLMGRKN---- 616 tsLtitnvtpeDggtYtCvv<-* L i n++++D+g+Y C hh05253 617 --LLIFNLSEGDSGVYQCLS 634 //