hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-09112705/chunk_1/iprscan-20080812-09112705.nocrc
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Query sequence: hh05253
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00630                                                 613.5   7.4e-180   1
SM00423                                                  59.2    5.2e-13   1
SM00409                                                  26.6     0.0035   1
SM00408                                                  25.9     0.0057   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00630    1/1      58   490 ..     1   532 []   613.5 7.4e-180
SM00423    1/1     510   562 ..     1    56 []    59.2  5.2e-13
SM00409    1/1     569   655 ..     1    58 []    26.6   0.0035
SM00408    1/1     575   639 ..     1    56 []    25.9   0.0057

Alignments of top-scoring domains:
SM00630: domain 1 of 1, from 58 to 490: score 613.5, E = 7.4e-180
                   *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps
                      +++lll+ed +  +ly+GAr++++++++ n+s+     ++++  w+ 
     hh05253    58    YSALLLSEDKD--TLYIGAREAVFAVNALNISE-----KQHEVYWKV 97   

                   ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv
                   +e+      k+ +Ca kgk    s +teC NyirvL++ ++    t Lyv
     hh05253    98 SED------KKAKCAEKGK----SKQTECLNYIRVLQPLSA----TSLYV 133  

                   CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg
                   CGTnaf+P   C ++nl++ ++                    ++ e+g+g
     hh05253   134 CGTNAFQP--ACDHLNLTSFKF-------------------LGKNEDGKG 162  

                   kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs
                   +CP+dP++s+tsv+vdg      eLYsgts++f+g       s+pii+R+
     hh05253   163 RCPFDPAHSYTSVMVDG------ELYSGTSYNFLG-------SEPIISRN 199  

                   lgttqdgfefefhslrttiydskwgydlnepnFVyaFeipes.g....dg
                             ++hs  +t+y   w   lnep FV a +i++s++++++++
     hh05253   200 ----------SSHSPLRTEYAIPW---LNEPSFVFADVIRKSpDspdgED 236  

                   dfVYFFFrEtaveainrdcssekavvsRVARvCknDvGGqrlLqkkWtSF
                   d VYFFF+E +ve+    ++ +++ ++R+ARvCk+D+GG r+LqkkWtSF
     hh05253   237 DRVYFFFTEVSVEY----EFVFRVLIPRIARVCKGDQGGLRTLQKKWTSF 282  

                   LKarLnCsvpgkggvrefyFneLQavfllppGaLArelgiesddvlYgVF
                   LKarL+Cs p+ g     +Fn+L++vf+l++    ++l++   +v+Y+ F
     hh05253   283 LKARLICSRPDSGL----VFNVLRDVFVLRS----PGLKV---PVFYALF 321  

                   sqgqqtssrdaanpipgSAVCaFslkdInavFneGpfkcyegpns...aw
                   +  +q ++     +++  AVC ++l++ ++vF+ G++++ ++ ++++++w
     hh05253   322 T--PQLNN----VGLS--AVCTYNLSTAEEVFSHGKYMQSTTVEQshtKW 363  

                   lpvegnkvPyprPGtCisntfregrndssskdlPddvlnfikdhpLmdea
                   ++++g +vP+prPG Ci++++r+  n++ss++lPd++l+f+kdhpLmd++
     hh05253   364 VRYNG-PVPKPRPGACIDSEARA-ANYTSSLNLPDKTLQFVKDHPLMDDS 411  

                   vpPltgrPllvktgtdyrlTsiaVdrvrgldGgkneytVlFlGTsdGrvl
                   v+P+ +rP l+k++++y  T+i+Vdr+++ldG+   y+V+F+ T++G ++
     hh05253   412 VTPIDNRPRLIKKDVNY--TQIVVDRTQALDGTV--YDVMFVSTDRGALH 457  

                   Kvvvsrsssssssaglesvlleelqvfppgsepirdmvlsskk<-*
                   K+++ ++          ++++ee q+f++  ep+++++lsskk   
     hh05253   458 KAISLEH---------AVHIIEETQLFQDF-EPVQTLLLSSKK    490  

SM00423: domain 1 of 1, from 510 to 562: score 59.2, E = 5.2e-13
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn
                       C ++  ++C++C+lardpy C+W + + +C+++++  +++rg++q+
     hh05253   510    FCGKH--GTCEDCVLARDPY-CAWSPPTATCVALhQTESPSRGLIQE 553  

                   wssgpssqCp<-*
                   +s  ++s Cp   
     hh05253   554 MSG-DASVCP    562  

SM00409: domain 1 of 1, from 569 to 655: score 26.6, E = 0.0035
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                       +++  k G++++L+C+ +++  +++W+ +++  +  +++ +  +++
     hh05253   569    YRqHFFKHGGTAELKCsQKsnlaRVFWKfqngvlkaespkyglmgrk 615  

                   .LtI.nvtpeDsesgGtYtCaat.......sgsasseqgttLtVl<-*
                   +L I n+++ Ds   G+Y+C  + + ++++  ++ +     L+V+   
     hh05253   616 nLLIfNLSEGDS---GVYQCLSEervknktVFQVVA--KHVLEVK    655  

SM00408: domain 1 of 1, from 575 to 639: score 25.9, E = 0.0057
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.........sgstLtik
                      + G++++L+C    +  + + W++++  l  ++++ +  +++ L i 
     hh05253   575    KHGGTAELKCS-QKSNLARVFWKFqNGVLKaespkyglmGRKNLLIF 620  

                   nvsleDsGlYtCvArNsvg<-*
                   n s++DsG+Y+C+ + +v    
     hh05253   621 NLSEGDSGVYQCLSEERVK    639  

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