hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-09171079/chunk_1/iprscan-20080812-09171079.nocrc
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Query sequence: hh05661
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04849.3.fs HAP1 N-terminal conserved region               356.5   3.9e-104   1
PF04849.3.ls HAP1 N-terminal conserved region               332.3    7.6e-97   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04849.3.fs   1/1     105   399 ..     1   282 [.   356.5 3.9e-104
PF04849.3.ls   1/1     105   449 ..     1   336 []   332.3  7.6e-97

Alignments of top-scoring domains:
PF04849.3.fs: domain 1 of 1, from 105 to 399: score 356.5, E = 3.9e-104
                   *->leeqlpkYklradtlyfmigyanedWsdpaaplsrppavsglspeqt
                      +  ++++++ ra++   ++g a ++W++paa+ +r+p+vsg++++++
     hh05661   105    RFVFQGPFGSRATGR--GTGKAAGIWKTPAAYVGRRPGVSGPERAAF 149  

                   retlkYflLCan.RVsqmtktydDIdavtrLLEE................
                   +++l  ++LC+n + + +++t  D++++++LLEE  ++  ++ + +   +
     hh05661   150 IRELE-EALCPNlPPPVKKITQEDVKVMLYLLEEllppvwesvtygmvlq 198  

                   KerDLELAArIGQsLLkqNkvLeerNekLEeqLgkarDeivQLrHELnkk
                   +erDL++AArIGQsL+kqN+vL+e+N kLE  Lg+a +ei+ LrH++n++
     hh05661   199 RERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEILYLRHQVNLR 248  

                   dELLrvySdadDDgEdEEDEEEE.EGEEEEResqcstplkhnesysapKP
                   dELL++ySd+d++ EdEE+EEEE+E EEE  e     +l+  ++  apK 
     hh05661   249 DELLQLYSDSDEEDEDEEEEEEEkEAEEEQEEEEAEEDLQCAHPCDAPKL 298  

                   PtkaeTl..qkslqLEaLqeKLKsLeeENerLRsEAsqLktETityEeKE
                         l++++++qLEaLqeKL +LeeEN  LR+EAsqL+t    +E+ E
     hh05661   299 ISQEALLhqHHCPQLEALQEKLRLLEEENHQLREEASQLDT----LEDEE 344  

                   qqLvldcVkqLreANdQmasLseeLekkteelerQqEeitkLlaeiadlq
                   q+L+l+cV+q+ eA++Qma+Lse+L++++e +erQq e+  L+a+  +lq
     hh05661   345 QMLILECVEQFLEASQQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQ 394  

                   kklks<-*
                   +++++   
     hh05661   395 QRCRM    399  

PF04849.3.ls: domain 1 of 1, from 105 to 449: score 332.3, E = 7.6e-97
                   *->leeqlpkYklradtlyfmigyanedWsdpaaplsrppavsglspeqt
                      +  ++++++ ra++   ++g a ++W++paa+ +r+p+vsg++++++
     hh05661   105    RFVFQGPFGSRATGR--GTGKAAGIWKTPAAYVGRRPGVSGPERAAF 149  

                   retlkYflLCan.RVsqmtktydDIdavtrLLEE................
                   +++l  ++LC+n + + +++t  D++++++LLEE  ++  ++ + +   +
     hh05661   150 IRELE-EALCPNlPPPVKKITQEDVKVMLYLLEEllppvwesvtygmvlq 198  

                   KerDLELAArIGQsLLkqNkvLeerNekLEeqLgkarDeivQLrHELnkk
                   +erDL++AArIGQsL+kqN+vL+e+N kLE  Lg+a +ei+ LrH++n++
     hh05661   199 RERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEILYLRHQVNLR 248  

                   dELLrvySdadDDgEdEEDEEEE.EGEEEEResqcstplkhnesysapKP
                   dELL++ySd+d++ EdEE+EEEE+E EEE  e     +l+  ++  apK 
     hh05661   249 DELLQLYSDSDEEDEDEEEEEEEkEAEEEQEEEEAEEDLQCAHPCDAPKL 298  

                   PtkaeTl..qkslqLEaLqeKLKsLeeENerLRsEAsqLktETityEeKE
                         l++++++qLEaLqeKL +LeeEN  LR+EAsqL+t    +E+ E
     hh05661   299 ISQEALLhqHHCPQLEALQEKLRLLEEENHQLREEASQLDT----LEDEE 344  

                   qqLvldcVkqLreANdQmasLseeLekkteelerQqEeitkLlaeiadlq
                   q+L+l+cV+q+ eA++Qma+Lse+L++++e +erQq e+  L+a+  +lq
     hh05661   345 QMLILECVEQFLEASQQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQ 394  

                   kklkslsve..kEElqqhLaaeKdaqrqltaElkElqDryaEclamlhEa
                   +++++ +  +  E l   L  +    r +    + +  r+ E   m++  
     hh05661   395 QRCRMETLPgfQETLAEELRTSL---RRMISDPVYFMERNYE---MPRGD 438  

                   QeelKklRsrS<-*
                    + l      S   
     hh05661   439 TSSLRYDFRYS    449  

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