hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-09222160/chunk_1/iprscan-20080812-09222160.nocrc
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Query sequence: hh05718
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07286.3.ls Protein of unknown function (DUF1445)          316.9    3.2e-92   1
PF07286.3.fs Protein of unknown function (DUF1445)          315.0    3.3e-92   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07286.3.fs   1/1     127   270 ..     1   148 []   315.0  3.3e-92
PF07286.3.ls   1/1     127   270 ..     1   148 []   316.9  3.2e-92

Alignments of top-scoring domains:
PF07286.3.fs: domain 1 of 1, from 127 to 270: score 315.0, E = 3.3e-92
                   *->lVtFlIGCSFSFEeALvleaGIpvRHleqgrnVPMYkTnipCrpaGr
                      +V+F++GCSFS+EeAL ++aG p+R++ +++ +++YkT++pC+++++
     hh05718   127    MVAFFLGCSFSLEEAL-EKAGLPRRDPAGHSQAGAYKTTVPCVTHAG 172  

                   FaGpmVVSMRPiPaaklerAvqiTsrfpavHGaPVHiGdPglkkIGIkDL
                   F++p+VV+MRPiP++kle++v++++++++++G+PVH+GdP+l  +GIk+L
     hh05718   173 FCCPLVVTMRPIPKDKLEGLVRACCSLGGEQGQPVHMGDPEL--LGIKEL 220  

                   skPDfGdaVsikpgEvPVFWACGVTPQavvmaskpPlPaitHaPGhMliT
                   skP++Gda++++pgEvPVFW++++T++++v+++++Pl a++++PG++++T
     hh05718   221 SKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSNCETPL-AFASIPGCTVMT 269  

                   D<-*
                   D   
     hh05718   270 D    270  

PF07286.3.ls: domain 1 of 1, from 127 to 270: score 316.9, E = 3.2e-92
                   *->lVtFlIGCSFSFEeALvleaGIpvRHleqgrnVPMYkTnipCrpaGr
                      +V+F++GCSFS+EeAL ++aG p+R++ +++ +++YkT++pC+++++
     hh05718   127    MVAFFLGCSFSLEEAL-EKAGLPRRDPAGHSQAGAYKTTVPCVTHAG 172  

                   FaGpmVVSMRPiPaaklerAvqiTsrfpavHGaPVHiGdPglkkIGIkDL
                   F++p+VV+MRPiP++kle++v++++++++++G+PVH+GdP+l  +GIk+L
     hh05718   173 FCCPLVVTMRPIPKDKLEGLVRACCSLGGEQGQPVHMGDPEL--LGIKEL 220  

                   skPDfGdaVsikpgEvPVFWACGVTPQavvmaskpPlPaitHaPGhMliT
                   skP++Gda++++pgEvPVFW++++T++++v+++++Pl a++++PG++++T
     hh05718   221 SKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSNCETPL-AFASIPGCTVMT 269  

                   D<-*
                   D   
     hh05718   270 D    270  

//