hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-09572944/chunk_1/iprscan-20080812-09572944.nocrc
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Query sequence: hh07616
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02373.13.fs JmjC domain                                     39.3    3.4e-11   1
PF02373.13.ls JmjC domain                                      6.6    0.00016   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02373.13.ls   1/1    1104  1212 ..     1   126 []     6.6  0.00016
PF02373.13.fs   1/1    1172  1212 ..    86   126 .]    39.3  3.4e-11

Alignments of top-scoring domains:
PF02373.13.ls: domain 1 of 1, from 1104 to 1212: score 6.6, E = 0.00016
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      +++++       w  ++q +   +++ f+a++        + ++f  
     hh07616  1104    KDFLSGLDGEGLWSPGSQVST--VWHVFRAQD------AQRIRRFL- 1141 

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                     +++ + + a  l   + p+    +l+  + + +   +e+g+ +++ +Q
     hh07616  1142 --QMVCPAG-AGAL-EPGAPG--SCYLDAGLRRRL--REEWGVSCWTLLQ 1183 

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                    pGE+V +++ga+H+v+ l ++++++++F   
     hh07616  1184 APGEAVLVPAGAPHQVQGLVSTVSVTQHF    1212 

PF02373.13.fs: domain 1 of 1, from 1172 to 1212: score 39.3, E = 3.4e-11
                   *->rengipvyrfvQkpGEfVitfPgayHavfNlGfniaeavNF<-*
                      +e+g+ +++ +Q pGE+V +++ga+H+v+ l ++++++++F   
     hh07616  1172    EEWGVSCWTLLQAPGEAVLVPAGAPHQVQGLVSTVSVTQHF    1212 

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