hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-09572944/chunk_1/iprscan-20080812-09572944.nocrc
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Query sequence: hh07616
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 149.6    3.2e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00558    1/1    1018  1229 ..     1   214 []   149.6  3.2e-40

Alignments of top-scoring domains:
SM00558: domain 1 of 1, from 1018 to 1229: score 149.6, E = 3.2e-40
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      + ++ +++ a+lP++ey+  +   gklnl+s+lp      ++    +
     hh07616  1018    DTSRVENLAASLPLPEYCALH---GKLNLASYLP-----PGLALRPL 1056 

                   gkPkpkpylymGma.E.srgstTpwHiDdydlySvNylhqgage......
                   +   p+ ++++G+ +++++ +t ++++++ dl  v +l++ +++ +  ++
     hh07616  1057 E---PQLWAAYGVSpHrGHLGTKNLCVEVADL--VSILVHADTPlpawhr 1101 

                   ...................d.GKrWyliPpedaeklekllkkhgkef.hi
                    +++  ++ ++++  +++++ + +W++++ +da++++++l++ +++   +
     hh07616  1102 aqkdflsgldgeglwspgsQvSTVWHVFRAQDAQRIRRFLQMVCPAGaGA 1151 

                   stapdlfkeqpdllihlstwispevlkkrlkeeperPlfqgvpvyrfvQk
                              +++  + +++++  l++rl+ee+      gv ++++ Q 
     hh07616  1152 -----------LEPGAPGSCYLDAGLRRRLREEW------GVSCWTLLQA 1184 

                   pGefvfiPpGwyHaVfnlGkfniavavNFaspewlpmglrlveelr<-*
                   pGe+v++P+G++H+V+ l+ ++++v+++F+spe   ++++l++      
     hh07616  1185 PGEAVLVPAGAPHQVQGLV-STVSVTQHFLSPETSALSAQLCHQGP    1229 

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