hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-10203595/chunk_1/iprscan-20080812-10203595.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh08958 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08326.2.ls Acetyl-CoA carboxylase, central region 1305.6 0 1 PF08326.2.fs Acetyl-CoA carboxylase, central region 1303.7 0 1 PF01039.12.ls Carboxyl transferase domain 1006.0 1.2e-299 1 PF01039.12.fs Carboxyl transferase domain 1004.0 4.8e-299 1 PF00364.12.fs Biotin-requiring enzyme 68.5 3.2e-18 1 PF00364.12.ls Biotin-requiring enzyme 70.3 5.5e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00364.12.ls 1/1 126 192 .. 1 74 [] 70.3 5.5e-18 PF00364.12.fs 1/1 126 192 .. 1 74 [] 68.5 3.2e-18 PF08326.2.fs 1/1 193 919 .. 1 789 [] 1303.7 0 PF08326.2.ls 1/1 193 919 .. 1 789 [] 1305.6 0 PF01039.12.fs 1/1 1006 1565 .. 1 584 [] 1004.0 4.8e-299 PF01039.12.ls 1/1 1006 1565 .. 1 584 [] 1006.0 1.2e-299 Alignments of top-scoring domains: PF00364.12.ls: domain 1 of 1, from 126 to 192: score 70.3, E = 5.5e-18 *->keiksPmiGesvkegtvvevlVkvGDkVkaGqvlcevEaMKmemeip ++++sP++G++ + + V++G +V+aG +++e E+MKm m+++ hh08958 126 TVLRSPSAGKLTQ------YTVEDGGHVEAGSSYAEMEVMKMIMTLN 166 ApvaGvvkeilvkeGdtVevGdpLaki<-* ++ G vk+i+ + G+++e+G++ a++ hh08958 167 VQERGRVKYIKRP-GAVLEAGCVVARL 192 PF00364.12.fs: domain 1 of 1, from 126 to 192: score 68.5, E = 3.2e-18 *->keiksPmiGesvkegtvvevlVkvGDkVkaGqvlcevEaMKmemeip ++++sP++G++ + + V++G +V+aG +++e E+MKm m+++ hh08958 126 TVLRSPSAGKLTQ------YTVEDGGHVEAGSSYAEMEVMKMIMTLN 166 ApvaGvvkeilvkeGdtVevGdpLaki<-* ++ G vk+i+ + G+++e+G++ a++ hh08958 167 VQERGRVKYIKRP-GAVLEAGCVVARL 192 PF08326.2.fs: domain 1 of 1, from 193 to 919: score 1303.7, E = 0 *->tLDDPSkVkhAePFeGqLPelGpPvivGtKphqrfaallniLeNILa +LDDPSkV+ AePF+G+LP ++ i G+K+hq+f+++l+ L N+++ hh08958 193 ELDDPSKVHPAEPFTGELPAQQTLPILGEKLHQVFHSVLENLTNVMS 239 GYDLPEPfNqvimnstlqeLievLRdPeLPYseWqeqmSaLhtRlPpkLd G++LPEP +++++++++q+L+++LR+P+LP++e+qe+m+++++R+P+ ++ hh08958 240 GFCLPEPVFSIKLKEWVQKLMMTLRHPSLPLLELQEIMTSVAGRIPAPVE 289 keLeslvekyelNirsrsaeFPAkqLrkiiekflaenvsekerevlertv k+++ ++++y++Ni+s++++FP++q++ i+++++a+++++++rev+++++ hh08958 290 KSVRRVMAQYASNITSVLCQFPSQQIATILDCHAATLQRKADREVFFINT 339 ePLvsLvkrYegGlksHEhavvasLLeeYysVEelFsgpnvreedVILkL +++v+Lv+rY++G+++ ++ vv +LL++Y++VE F+ +++++++++L hh08958 340 QSIVQLVQRYRSGIRGYMKTVVLDLLRRYLRVEHHFQQ--AHYDKCVINL 387 RdenkkDLdKVVdivLSHsrVsaKNkLvLaLLdklyypnpalssevsayl R+++k D+++V+d+++SH++V++KN+Lv++L+d+l++p+p+ls+e l hh08958 388 REQFKPDMSQVLDCIFSHAQVAKKNQLVIMLIDELCGPDPSLSDE----L 433 rdaLkkLaeLesrataKVALKAREvLIqcaLPSleeRtaQlesILrssVv +++L++L++L++ +++KVAL+AR++LI+++LPS+e+R++Q+esI++s++ hh08958 434 ISILNELTQLSKSEHCKVALRARQILIASHLPSYELRHNQVESIFLSAI- 482 esgYGedgpkhrePsleiLkeLvdSkytVFDVLvqFFdHsDpwVslAAlE ++YG+++ ++e+Lk+L++S++t+FDVL++FF+H +++V++A lE hh08958 483 -DMYGHQF------CPENLKKLILSETTIFDVLPTFFYHANKVVCMASLE 525 VYvRRAYraYsvkdiqyhqgedeppivsWqFqlpssassnltgvssstsk VYvRR Y+aY+++++q++q+ d++++v++qF+lpss+++++t ++s t+ hh08958 526 VYVRRGYIAYELNSLQHRQLPDSTCVVEFQFMLPSSHPNRMTVPISITN- 574 stpsttfsRaaSvSDLsyvvnkspeppkRtGamvavksLedleeilsaaL + +++ +L++++ +sp + +R+Gamva++++ed+ +++++++ hh08958 575 ------PDLLRHSTELFMDSGFSPLC-QRMGAMVAFRRFEDFTRNFDEVI 617 eelprsgarspgsvead.....sdesngasaelsnvlNqVavrstegled +++++ ++++p ++ea+++ ++d++++ ++e++++lN V+++++++l hh08958 618 SCFANVPKDTPLFSEARtslysEDDCKSLREEPIHILN-VSIQCADHL-- 664 ddqellarLskilkenkvtseLlaagvRRITFvfgrdegryPkyyTFrgs +d++l+ +L+ +++++k ++L+++g+RRITF++++ e+++Pk++TFr++ hh08958 665 EDEALVPILRTFVQSKK--NILVDYGLRRITFLIAQ-EKEFPKFFTFRAR 711 deklyYeEdeiIRHiEPALAfQLELgRlLsgnFdIkpvPTrNRnIHvYea d +++Ed+i+RH+EPALAfQLEL+R ++ nFd+++vP++N+++H+Y++ hh08958 712 D---EFAEDRIYRHLEPALAFQLELNR-MR-NFDLTAVPCANHKMHLYLG 756 vgKnspsqevtDkRFFvRaIiRpGrlrddiataEyLisEadteSlSFTSn ++K++++ evtD+RFF+RaIiR+++l++++a++EyL++E++ hh08958 757 AAKVKEGVEVTDHRFFIRAIIRHSDLITKEASFEYLQNEGE--------- 797 SILRllndiLDeLEVidtstevnsDlNHIFlNILrEQkllDLvPFspvfn Rll++++DeLEV++++t v++D+NHIFlN F+p+++ hh08958 798 ---RLLLEAMDELEVAFNNTSVRTDCNHIFLN------------FVPTVI 832 vdpedvEaavggfLeRfareIHesvGrRLWRLRVtqAEIRiiitdpetga +dp ++E++v+++++R+ G+RLW+LRV+qAE++i+i+++ tg+ hh08958 833 MDPFKIEESVRYMVMRY--------GSRLWKLRVLQAEVKINIRQTTTGS 874 pgPlRviItNvSGYvvkvElYrEvkndktGewifkSiggtgkpGslH<-* ++P+R++ItN+SGY+++++lY+Ev+++++G+++f+S+ ++k+G++H hh08958 875 AVPIRLFITNESGYYLDISLYKEVTDSRSGNIMFHSF--GNKQGPQH 919 PF08326.2.ls: domain 1 of 1, from 193 to 919: score 1305.6, E = 0 *->tLDDPSkVkhAePFeGqLPelGpPvivGtKphqrfaallniLeNILa +LDDPSkV+ AePF+G+LP ++ i G+K+hq+f+++l+ L N+++ hh08958 193 ELDDPSKVHPAEPFTGELPAQQTLPILGEKLHQVFHSVLENLTNVMS 239 GYDLPEPfNqvimnstlqeLievLRdPeLPYseWqeqmSaLhtRlPpkLd G++LPEP +++++++++q+L+++LR+P+LP++e+qe+m+++++R+P+ ++ hh08958 240 GFCLPEPVFSIKLKEWVQKLMMTLRHPSLPLLELQEIMTSVAGRIPAPVE 289 keLeslvekyelNirsrsaeFPAkqLrkiiekflaenvsekerevlertv k+++ ++++y++Ni+s++++FP++q++ i+++++a+++++++rev+++++ hh08958 290 KSVRRVMAQYASNITSVLCQFPSQQIATILDCHAATLQRKADREVFFINT 339 ePLvsLvkrYegGlksHEhavvasLLeeYysVEelFsgpnvreedVILkL +++v+Lv+rY++G+++ ++ vv +LL++Y++VE F+ +++++++++L hh08958 340 QSIVQLVQRYRSGIRGYMKTVVLDLLRRYLRVEHHFQQ--AHYDKCVINL 387 RdenkkDLdKVVdivLSHsrVsaKNkLvLaLLdklyypnpalssevsayl R+++k D+++V+d+++SH++V++KN+Lv++L+d+l++p+p+ls+e l hh08958 388 REQFKPDMSQVLDCIFSHAQVAKKNQLVIMLIDELCGPDPSLSDE----L 433 rdaLkkLaeLesrataKVALKAREvLIqcaLPSleeRtaQlesILrssVv +++L++L++L++ +++KVAL+AR++LI+++LPS+e+R++Q+esI++s++ hh08958 434 ISILNELTQLSKSEHCKVALRARQILIASHLPSYELRHNQVESIFLSAI- 482 esgYGedgpkhrePsleiLkeLvdSkytVFDVLvqFFdHsDpwVslAAlE ++YG+++ ++e+Lk+L++S++t+FDVL++FF+H +++V++A lE hh08958 483 -DMYGHQF------CPENLKKLILSETTIFDVLPTFFYHANKVVCMASLE 525 VYvRRAYraYsvkdiqyhqgedeppivsWqFqlpssassnltgvssstsk VYvRR Y+aY+++++q++q+ d++++v++qF+lpss+++++t ++s t+ hh08958 526 VYVRRGYIAYELNSLQHRQLPDSTCVVEFQFMLPSSHPNRMTVPISITN- 574 stpsttfsRaaSvSDLsyvvnkspeppkRtGamvavksLedleeilsaaL + +++ +L++++ +sp + +R+Gamva++++ed+ +++++++ hh08958 575 ------PDLLRHSTELFMDSGFSPLC-QRMGAMVAFRRFEDFTRNFDEVI 617 eelprsgarspgsvead.....sdesngasaelsnvlNqVavrstegled +++++ ++++p ++ea+++ ++d++++ ++e++++lN V+++++++l hh08958 618 SCFANVPKDTPLFSEARtslysEDDCKSLREEPIHILN-VSIQCADHL-- 664 ddqellarLskilkenkvtseLlaagvRRITFvfgrdegryPkyyTFrgs +d++l+ +L+ +++++k ++L+++g+RRITF++++ e+++Pk++TFr++ hh08958 665 EDEALVPILRTFVQSKK--NILVDYGLRRITFLIAQ-EKEFPKFFTFRAR 711 deklyYeEdeiIRHiEPALAfQLELgRlLsgnFdIkpvPTrNRnIHvYea d +++Ed+i+RH+EPALAfQLEL+R ++ nFd+++vP++N+++H+Y++ hh08958 712 D---EFAEDRIYRHLEPALAFQLELNR-MR-NFDLTAVPCANHKMHLYLG 756 vgKnspsqevtDkRFFvRaIiRpGrlrddiataEyLisEadteSlSFTSn ++K++++ evtD+RFF+RaIiR+++l++++a++EyL++E++ hh08958 757 AAKVKEGVEVTDHRFFIRAIIRHSDLITKEASFEYLQNEGE--------- 797 SILRllndiLDeLEVidtstevnsDlNHIFlNILrEQkllDLvPFspvfn Rll++++DeLEV++++t v++D+NHIFlN F+p+++ hh08958 798 ---RLLLEAMDELEVAFNNTSVRTDCNHIFLN------------FVPTVI 832 vdpedvEaavggfLeRfareIHesvGrRLWRLRVtqAEIRiiitdpetga +dp ++E++v+++++R+ G+RLW+LRV+qAE++i+i+++ tg+ hh08958 833 MDPFKIEESVRYMVMRY--------GSRLWKLRVLQAEVKINIRQTTTGS 874 pgPlRviItNvSGYvvkvElYrEvkndktGewifkSiggtgkpGslH<-* ++P+R++ItN+SGY+++++lY+Ev+++++G+++f+S+ ++k+G++H hh08958 875 AVPIRLFITNESGYYLDISLYKEVTDSRSGNIMFHSF--GNKQGPQH 919 PF01039.12.fs: domain 1 of 1, from 1006 to 1565: score 1004.0, E = 4.8e-299 *->kavkTkqhpkGkltareRidlLldpGSpFgEledlafhrvtefglqa +++kT+++p+G+ ++++++d+++++GS Fg+ edl+ r++e ++ hh08958 1006 MRFKTQEYPEGRDVIVIGNDITFRIGS-FGPGEDLLYLRASEMAR-- 1049 dkrglPgdGVvTGsGaidGravevfaqDftvfGGslgpahgfKYlYitka ++g+P ++V+++sGa++G+a+e++++++++++++ +p++gfKYlY+t++ hh08958 1050 -AEGIPKIYVAANSGARIGMAEEIKHMFHVAWVDPEDPHKGFKYLYLTPQ 1098 melAika.nsVatehvveesGaPliginDSgGAedgGPRIqeGvesLaGy ++++i++ nsV+++h++e+ G+ +++i+D++G++dg +Gve+L+G+ hh08958 1099 DYTRISSlNSVHCKHIEEG-GESRYMITDIIGKDDG-----LGVENLRGS 1142 GlIFgrnsraSgvIPQIslimGpcaGGGaYsPaLtdfiimVkdptspmFl G+I+g+ s+a+++I +Isl++++++G+GaY+++L++++i+V++ s+++l hh08958 1143 GMIAGESSLAYEEIVTISLVTCRAIGIGAYLVRLGQRVIQVEN--SHIIL 1190 TGPdvikkVtGREevtseeLGGadqHmaksGvaHltaeddedAlalirkl TG+++++kV+GRE++ts++++G++q+m+ +Gv+H+t+ dd++++++i+++ hh08958 1191 TGASALNKVLGREVYTSNNQLGGVQIMHYNGVSHITVPDDFEGVYTILEW 1240 lSyLPkkrsnnmeppPivetgDppdrsveelrtdDLlvsivPddpnkPYD lSy+Pk++++ p+Pi ++Dp dr ++++ P+ ++PYD hh08958 1241 LSYMPKDNHS---PVPIITPTDPIDR----------EIEFLPS--RAPYD 1275 vRevIarivDedgk.kwl.GlFDegeFlEikagyAkniVtGfARlgGipV +R+++a++ +++ k++w++G+FD+g+F+Ei+a +A+++VtG+ARlgGipV hh08958 1276 PRWMLAGRPHPTLKgTWQsGFFDHGSFKEIMAPWAQTVVTGRARLGGIPV 1325 GiVANqprTvEnviPADPAnpdSkEavivlAGQvLdidSadKaArFirfC G++A+++rTvE ++PADPAn+dS++++i++AGQv+++dSa+K+A++i+++ hh08958 1326 GVIAVETRTVEVAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDF 1375 dagfnIPLviLvDvpGFlpGtdqEygGIirhGAkllyAlaeAtVPkitvI ++ +++PL+i+++++GF++G++++y++++++GA+++++l+ +++P++++I hh08958 1376 NR-EKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRQYKQPILIYI 1424 tRmGkaYGGayvVMdskilgaDlveMYfawPtArIAVMGpeGAveIlfrk +++++++GG++vV+d +i++ ++eMY++ ++r++V++peG+veI+frk hh08958 1425 PPYAELRGGSWVVIDATINPL-CIEMYADK-ESRGGVLEPEGTVEIKFRK 1472 elaaaamerlDptykdlealL.e.kls.eaqedrkqkiaeyeeqlanPYv +++ ++m+r+Dp yk+l ++L+e++ls+++++d++ +++++e++l+++Y+ hh08958 1473 KDLIKSMRRIDPAYKKLMEQLgEpDLSdKDRKDLEGRLKAREDLLLPIYH 1522 aaargfvDdvIdPgetRaklvialallwtkrrrffpwrkhgni<-* ++a++f+D +++Pg++ +k+vi+ l+w+ +r+f++wr+++ + hh08958 1523 QVAVQFADFHDTPGRMLEKGVISDILEWKTARTFLYWRLRRLL 1565 PF01039.12.ls: domain 1 of 1, from 1006 to 1565: score 1006.0, E = 1.2e-299 *->kavkTkqhpkGkltareRidlLldpGSpFgEledlafhrvtefglqa +++kT+++p+G+ ++++++d+++++GS Fg+ edl+ r++e ++ hh08958 1006 MRFKTQEYPEGRDVIVIGNDITFRIGS-FGPGEDLLYLRASEMAR-- 1049 dkrglPgdGVvTGsGaidGravevfaqDftvfGGslgpahgfKYlYitka ++g+P ++V+++sGa++G+a+e++++++++++++ +p++gfKYlY+t++ hh08958 1050 -AEGIPKIYVAANSGARIGMAEEIKHMFHVAWVDPEDPHKGFKYLYLTPQ 1098 melAika.nsVatehvveesGaPliginDSgGAedgGPRIqeGvesLaGy ++++i++ nsV+++h++e+ G+ +++i+D++G++dg +Gve+L+G+ hh08958 1099 DYTRISSlNSVHCKHIEEG-GESRYMITDIIGKDDG-----LGVENLRGS 1142 GlIFgrnsraSgvIPQIslimGpcaGGGaYsPaLtdfiimVkdptspmFl G+I+g+ s+a+++I +Isl++++++G+GaY+++L++++i+V++ s+++l hh08958 1143 GMIAGESSLAYEEIVTISLVTCRAIGIGAYLVRLGQRVIQVEN--SHIIL 1190 TGPdvikkVtGREevtseeLGGadqHmaksGvaHltaeddedAlalirkl TG+++++kV+GRE++ts++++G++q+m+ +Gv+H+t+ dd++++++i+++ hh08958 1191 TGASALNKVLGREVYTSNNQLGGVQIMHYNGVSHITVPDDFEGVYTILEW 1240 lSyLPkkrsnnmeppPivetgDppdrsveelrtdDLlvsivPddpnkPYD lSy+Pk++++ p+Pi ++Dp dr ++++ P+ ++PYD hh08958 1241 LSYMPKDNHS---PVPIITPTDPIDR----------EIEFLPS--RAPYD 1275 vRevIarivDedgk.kwl.GlFDegeFlEikagyAkniVtGfARlgGipV +R+++a++ +++ k++w++G+FD+g+F+Ei+a +A+++VtG+ARlgGipV hh08958 1276 PRWMLAGRPHPTLKgTWQsGFFDHGSFKEIMAPWAQTVVTGRARLGGIPV 1325 GiVANqprTvEnviPADPAnpdSkEavivlAGQvLdidSadKaArFirfC G++A+++rTvE ++PADPAn+dS++++i++AGQv+++dSa+K+A++i+++ hh08958 1326 GVIAVETRTVEVAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDF 1375 dagfnIPLviLvDvpGFlpGtdqEygGIirhGAkllyAlaeAtVPkitvI ++ +++PL+i+++++GF++G++++y++++++GA+++++l+ +++P++++I hh08958 1376 NR-EKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRQYKQPILIYI 1424 tRmGkaYGGayvVMdskilgaDlveMYfawPtArIAVMGpeGAveIlfrk +++++++GG++vV+d +i++ ++eMY++ ++r++V++peG+veI+frk hh08958 1425 PPYAELRGGSWVVIDATINPL-CIEMYADK-ESRGGVLEPEGTVEIKFRK 1472 elaaaamerlDptykdlealL.e.kls.eaqedrkqkiaeyeeqlanPYv +++ ++m+r+Dp yk+l ++L+e++ls+++++d++ +++++e++l+++Y+ hh08958 1473 KDLIKSMRRIDPAYKKLMEQLgEpDLSdKDRKDLEGRLKAREDLLLPIYH 1522 aaargfvDdvIdPgetRaklvialallwtkrrrffpwrkhgni<-* ++a++f+D +++Pg++ +k+vi+ l+w+ +r+f++wr+++ + hh08958 1523 QVAVQFADFHDTPGRMLEKGVISDILEWKTARTFLYWRLRRLL 1565 //