hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-10263472/chunk_1/iprscan-20080812-10263472.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh09010 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00400.22.ls WD domain, G-beta repeat 358.2 1.2e-104 8 PF00400.22.fs WD domain, G-beta repeat 342.4 6.8e-100 8 PF08154.2.fs NLE (NUC135) domain 87.7 2.4e-24 1 PF08154.2.ls NLE (NUC135) domain 89.6 9e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08154.2.fs 1/1 18 79 .. 1 70 [] 87.7 2.4e-24 PF08154.2.ls 1/1 18 79 .. 1 70 [] 89.6 9e-24 PF00400.22.ls 1/8 106 144 .. 1 38 [] 53.4 7e-13 PF00400.22.fs 1/8 106 144 .. 1 38 [] 51.4 1.6e-13 PF00400.22.ls 2/8 148 186 .. 1 38 [] 47.5 4.1e-11 PF00400.22.fs 2/8 148 186 .. 1 38 [] 45.6 7.3e-12 PF00400.22.ls 3/8 191 234 .. 1 38 [] 46.0 1.2e-10 PF00400.22.fs 3/8 191 234 .. 1 38 [] 44.0 2e-11 PF00400.22.ls 4/8 238 275 .. 1 38 [] 46.0 1.2e-10 PF00400.22.fs 4/8 238 275 .. 1 38 [] 44.0 2e-11 PF00400.22.fs 5/8 279 359 .. 1 38 [] 24.5 6e-06 PF00400.22.ls 5/8 279 359 .. 1 38 [] 26.5 8.5e-05 PF00400.22.fs 6/8 364 402 .. 1 38 [] 43.1 3.6e-11 PF00400.22.ls 6/8 364 402 .. 1 38 [] 45.0 2.3e-10 PF00400.22.fs 7/8 406 444 .. 1 38 [] 47.0 2.9e-12 PF00400.22.ls 7/8 406 444 .. 1 38 [] 48.9 1.5e-11 PF00400.22.fs 8/8 448 486 .. 1 38 [] 42.9 4.1e-11 PF00400.22.ls 8/8 448 486 .. 1 38 [] 44.8 2.6e-10 Alignments of top-scoring domains: PF08154.2.fs: domain 1 of 1, from 18 to 79: score 87.7, E = 2.4e-24 *->qVqvrFvTkegdellavpdspfaiPvdltraeLseivNkLLeaenpd ++ v+F ++ g++l +spf++Pvd+t++ L++++N+LL +e hh09010 18 RLLVQFQDEGGQLL----GSPFDVPVDITPDRLQLVCNALLAQE--- 57 dkpvpFdFLvdgeelRtsLedyL<-* +p+p++F+v+++e+++sL+++L hh09010 58 -DPLPLAFFVHDAEIVSSLGKTL 79 PF08154.2.ls: domain 1 of 1, from 18 to 79: score 89.6, E = 9e-24 *->qVqvrFvTkegdellavpdspfaiPvdltraeLseivNkLLeaenpd ++ v+F ++ g++l +spf++Pvd+t++ L++++N+LL +e hh09010 18 RLLVQFQDEGGQLL----GSPFDVPVDITPDRLQLVCNALLAQE--- 57 dkpvpFdFLvdgeelRtsLedyL<-* +p+p++F+v+++e+++sL+++L hh09010 58 -DPLPLAFFVHDAEIVSSLGKTL 79 PF00400.22.ls: domain 1 of 8, from 106 to 144: score 53.4, E = 7e-13 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* c+++l+gH+ +V +vafsp g++lasgS D t++ Wd hh09010 106 TRCTsSLeGHSEAVISVAFSPT-GKYLASGSGDTTVRFWD 144 PF00400.22.fs: domain 1 of 8, from 106 to 144: score 51.4, E = 1.6e-13 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* c+++l+gH+ +V +vafsp g++lasgS D t++ Wd hh09010 106 TRCTsSLeGHSEAVISVAFSPT-GKYLASGSGDTTVRFWD 144 PF00400.22.ls: domain 2 of 8, from 148 to 186: score 47.5, E = 4.1e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ + +gH ++V ++++spd g+ lasg+ +g i +Wd hh09010 148 ETPHfTCkGHRHWVLSISWSPD-GKKLASGCKNGQILLWD 186 PF00400.22.fs: domain 2 of 8, from 148 to 186: score 45.6, E = 7.3e-12 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ + +gH ++V ++++spd g+ lasg+ +g i +Wd hh09010 148 ETPHfTCkGHRHWVLSISWSPD-GKKLASGCKNGQILLWD 186 PF00400.22.ls: domain 3 of 8, from 191 to 234: score 46.0, E = 1.2e-10 *->geck.vl.gHtstVtcvafspd....sgpllasgSrDgtikiWd<-* +++ ++l gH++++t +++ p ++++++++as+S Dg+++iWd hh09010 191 KQVGrTLaGHSKWITGLSWEPLhanpECRYVASSSKDGSVRIWD 234 PF00400.22.fs: domain 3 of 8, from 191 to 234: score 44.0, E = 2e-11 *->geck.vl.gHtstVtcvafspd....sgpllasgSrDgtikiWd<-* +++ ++l gH++++t +++ p ++++++++as+S Dg+++iWd hh09010 191 KQVGrTLaGHSKWITGLSWEPLhanpECRYVASSSKDGSVRIWD 234 PF00400.22.ls: domain 4 of 8, from 238 to 275: score 46.0, E = 1.2e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g c ++l+gHt +Vtc+++ d ll s+S D+tik+W hh09010 238 GRCErILtGHTQSVTCLRWGGD--GLLYSASQDRTIKVWR 275 PF00400.22.fs: domain 4 of 8, from 238 to 275: score 44.0, E = 2e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g c ++l+gHt +Vtc+++ d ll s+S D+tik+W hh09010 238 GRCErILtGHTQSVTCLRWGGD--GLLYSASQDRTIKVWR 275 PF00400.22.fs: domain 5 of 8, from 279 to 359: score 24.5, E = 6e-06 *->geck.vl.gHtstVtcvafspd......................... g + ++l+gH ++V+ +a s d + +++ ++++++ ++ + + hh09010 279 GVLCrTLqGHGHWVNTMALSTDyalrtgafepaeasvnpqdlqgflq 325 ................sgpllasgSrDgtikiWd<-* + ++ + + + + ++++l+sgS+D t+ +W+ hh09010 326 elkeralsrynlvrgqGPERLVSGSDDFTLFLWS 359 PF00400.22.ls: domain 5 of 8, from 279 to 359: score 26.5, E = 8.5e-05 *->geck.vl.gHtstVtcvafspd......................... g + ++l+gH ++V+ +a s d + +++ ++++++ ++ + + hh09010 279 GVLCrTLqGHGHWVNTMALSTDyalrtgafepaeasvnpqdlqgflq 325 ................sgpllasgSrDgtikiWd<-* + ++ + + + + ++++l+sgS+D t+ +W+ hh09010 326 elkeralsrynlvrgqGPERLVSGSDDFTLFLWS 359 PF00400.22.fs: domain 6 of 8, from 364 to 402: score 43.1, E = 3.6e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++ +gH++ ++ v fspd ++++as+S D++ik+Wd hh09010 364 KKPLtRMtGHQALINQVLFSPD-SRIVASASFDKSIKLWD 402 PF00400.22.ls: domain 6 of 8, from 364 to 402: score 45.0, E = 2.3e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++ +gH++ ++ v fspd ++++as+S D++ik+Wd hh09010 364 KKPLtRMtGHQALINQVLFSPD-SRIVASASFDKSIKLWD 402 PF00400.22.fs: domain 7 of 8, from 406 to 444: score 47.0, E = 2.9e-12 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ + +l+gH ++V+ +a+s d ++ll+sgS+D t+k+Wd hh09010 406 GKYLaSLrGHVAAVYQIAWSAD-SRLLVSGSSDSTLKVWD 444 PF00400.22.ls: domain 7 of 8, from 406 to 444: score 48.9, E = 1.5e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ + +l+gH ++V+ +a+s d ++ll+sgS+D t+k+Wd hh09010 406 GKYLaSLrGHVAAVYQIAWSAD-SRLLVSGSSDSTLKVWD 444 PF00400.22.fs: domain 8 of 8, from 448 to 486: score 42.9, E = 4.1e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ l+gH + V++v++spd g+++asg+ D++++iW hh09010 448 QKLAmDLpGHADEVYAVDWSPD-GQRVASGGKDKCLRIWR 486 PF00400.22.ls: domain 8 of 8, from 448 to 486: score 44.8, E = 2.6e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ l+gH + V++v++spd g+++asg+ D++++iW hh09010 448 QKLAmDLpGHADEVYAVDWSPD-GQRVASGGKDKCLRIWR 486 //