hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-15200238/chunk_1/iprscan-20090618-15200238.nocrc
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Query sequence: hh09742
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01399.17.ls PCI domain                                     102.4    1.3e-27   1
PF01399.17.fs PCI domain                                     100.6    1.9e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01399.17.fs   1/1     292   396 ..     1   135 []   100.6  1.9e-27
PF01399.17.ls   1/1     292   396 ..     1   135 []   102.4  1.3e-27

Alignments of top-scoring domains:
PF01399.17.fs: domain 1 of 1, from 292 to 396: score 100.6, E = 1.9e-27
                   *->payrdLleafysgdlsdfeeiladhvmAKalkGwqkkeellldpgla
                       ay++L++++ +++ s+ + ++++h            +e + ++++ 
     hh09742   292    NAYHELAQVYSTNNPSELRNLVNKH------------SETFTRDNNM 326  

                   ekvwlegdkhledLrrkirelnlrrlakftysapYssislsdlakllgls
                            +++++   ++++n++rl+k     ++ ++sl+d+a+ ++ls
     hh09742   327 G--------LVKQCLSSLYKKNIQRLTK-----TFLTLSLQDMASRVQLS 363  

                   vvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-*
                   ++     +e+Ek++  +I+dg+i ++I+q++g+v +++   
     hh09742   364 GP-----QEAEKYVLHMIEDGEIFASINQKDGMVSFHD    396  

PF01399.17.ls: domain 1 of 1, from 292 to 396: score 102.4, E = 1.3e-27
                   *->payrdLleafysgdlsdfeeiladhvmAKalkGwqkkeellldpgla
                       ay++L++++ +++ s+ + ++++h            +e + ++++ 
     hh09742   292    NAYHELAQVYSTNNPSELRNLVNKH------------SETFTRDNNM 326  

                   ekvwlegdkhledLrrkirelnlrrlakftysapYssislsdlakllgls
                            +++++   ++++n++rl+k     ++ ++sl+d+a+ ++ls
     hh09742   327 G--------LVKQCLSSLYKKNIQRLTK-----TFLTLSLQDMASRVQLS 363  

                   vvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-*
                   ++     +e+Ek++  +I+dg+i ++I+q++g+v +++   
     hh09742   364 GP-----QEAEKYVLHMIEDGEIFASINQKDGMVSFHD    396  

//