hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-15200238/chunk_1/iprscan-20090618-15200238.nocrc
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Query sequence: hh09742
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00088                                                  93.8    2.1e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00088    1/1     327   417 ..     1    92 []    93.8  2.1e-23

Alignments of top-scoring domains:
SM00088: domain 1 of 1, from 327 to 417: score 93.8, E = 2.1e-23
                   *->qhverLqrkiretnllqlsepYPssislsdlakllglsvpeevEklv
                       +v ++++ ++++n+++l++++  ++sl+d+a+ ++ls p+e+Ek+v
     hh09742   327    GLVKQCLSSLYKKNIQRLTKTF-LTLSLQDMASRVQLSGPQEAEKYV 372  

                   skaIrdgeisakIDqvngivefeevdpryltsnqlaqlaerlkkl<-*
                   + +I+dgei a+I+q++g+v+f+++++ y+++ +l+++++  +k+   
     hh09742   373 LHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKC    417  

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