# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohh10031.fasta.nr -Q hh10031.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hh10031, 127 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6839844 sequences Expectation_n fit: rho(ln(x))= 4.6404+/-0.000179; mu= 8.3084+/- 0.010 mean_var=59.9472+/-11.567, 0's: 42 Z-trim: 60 B-trim: 2 in 1/66 Lambda= 0.165649 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087234|dbj|BAD92064.1| ribosomal protein S6 k ( 127) 884 218.7 1.6e-55 gi|194387128|dbj|BAG59930.1| unnamed protein produ ( 154) 434 111.2 4.4e-23 gi|119595026|gb|EAW74620.1| ribosomal protein S6 k ( 478) 434 111.6 1e-22 gi|119595027|gb|EAW74621.1| ribosomal protein S6 k ( 482) 434 111.6 1.1e-22 gi|12643872|sp|Q9UBS0.1|KS6B2_HUMAN Ribosomal prot ( 482) 434 111.6 1.1e-22 gi|33303901|gb|AAQ02464.1| ribosomal protein S6 ki ( 483) 434 111.6 1.1e-22 gi|3882085|dbj|BAA34402.1| p70 ribosomal S6 kinase ( 495) 434 111.6 1.1e-22 gi|114638836|ref|XP_001172909.1| PREDICTED: simila ( 482) 430 110.7 2e-22 gi|109105416|ref|XP_001117937.1| PREDICTED: simila ( 512) 424 109.2 5.8e-22 gi|56611111|gb|AAH06106.3| Ribosomal protein S6 ki ( 482) 420 108.3 1.1e-21 gi|4165311|dbj|BAA37145.1| S6 kinase b [Homo sapie ( 481) 417 107.6 1.8e-21 gi|114638838|ref|XP_001172899.1| PREDICTED: simila ( 505) 416 107.3 2.2e-21 gi|194679675|ref|XP_582478.4| PREDICTED: similar t ( 485) 412 106.4 4e-21 gi|73982827|ref|XP_864699.1| PREDICTED: similar to ( 151) 405 104.3 5.3e-21 gi|73982829|ref|XP_864715.1| PREDICTED: similar to ( 170) 405 104.3 5.8e-21 gi|73982831|ref|XP_851971.1| PREDICTED: similar to ( 482) 405 104.7 1.3e-20 gi|30186223|gb|AAH51631.1| Rps6kb2 protein [Mus mu ( 153) 398 102.6 1.7e-20 gi|126338764|ref|XP_001364298.1| PREDICTED: simila ( 476) 400 103.5 2.9e-20 gi|57921008|gb|AAH89102.1| Ribosomal protein S6 ki ( 312) 398 102.9 2.9e-20 gi|11133233|sp|Q9Z1M4.1|KS6B2_MOUSE Ribosomal prot ( 485) 398 103.0 4.1e-20 gi|149061957|gb|EDM12380.1| ribosomal protein S6 k ( 485) 398 103.0 4.1e-20 gi|44890402|gb|AAH66842.1| Rps6kb2 protein [Mus mu ( 293) 390 100.9 1.1e-19 gi|73966654|ref|XP_867330.1| PREDICTED: similar to ( 140) 313 82.3 2.1e-14 gi|56237871|emb|CAI25798.1| ribosomal protein S6 k ( 74) 309 81.1 2.5e-14 gi|71052007|gb|AAH36033.1| RPS6KB1 protein [Homo s ( 140) 310 81.6 3.4e-14 gi|194375672|dbj|BAG56781.1| unnamed protein produ ( 481) 314 82.9 4.5e-14 gi|47939270|gb|AAH71244.1| Rps6kb1 protein [Mus mu ( 177) 309 81.4 4.8e-14 gi|149053748|gb|EDM05565.1| ribosomal protein S6 k ( 245) 309 81.5 6.2e-14 gi|126307416|ref|XP_001362432.1| PREDICTED: simila ( 525) 312 82.5 6.7e-14 gi|26351739|dbj|BAC39506.1| unnamed protein produc ( 316) 309 81.6 7.5e-14 gi|114669680|ref|XP_523815.2| PREDICTED: similar t ( 451) 309 81.7 9.8e-14 gi|31418467|gb|AAH53365.1| RPS6KB1 protein [Homo s ( 451) 309 81.7 9.8e-14 gi|194386164|dbj|BAG59646.1| unnamed protein produ ( 472) 309 81.7 1e-13 gi|149635566|ref|XP_001509850.1| PREDICTED: simila ( 482) 309 81.7 1e-13 gi|73966660|ref|XP_867365.1| PREDICTED: similar to ( 489) 309 81.7 1e-13 gi|53128187|emb|CAG31278.1| hypothetical protein [ ( 502) 309 81.8 1.1e-13 gi|117616278|gb|ABK42157.1| p70 S6 kinase [synthet ( 502) 309 81.8 1.1e-13 gi|206840|gb|AAA42103.1| S6 kinase ( 502) 309 81.8 1.1e-13 gi|189510|gb|AAA36411.1| p70 ribosomal S6 kinase a ( 502) 309 81.8 1.1e-13 gi|54041073|sp|P67999.1|KS6B1_RAT Ribosomal protei ( 525) 309 81.8 1.1e-13 gi|54041569|sp|P67998.1|KS6B1_RABIT Ribosomal prot ( 525) 309 81.8 1.1e-13 gi|54041234|sp|P23443.2|KS6B1_HUMAN Ribosomal prot ( 525) 309 81.8 1.1e-13 gi|109114561|ref|XP_001109701.1| PREDICTED: simila ( 525) 309 81.8 1.1e-13 gi|206842|gb|AAA42104.1| S6 protein kinase gi| ( 525) 309 81.8 1.1e-13 gi|149724008|ref|XP_001503803.1| PREDICTED: riboso ( 525) 309 81.8 1.1e-13 gi|74187271|dbj|BAE22625.1| unnamed protein produc ( 525) 309 81.8 1.1e-13 gi|57091199|ref|XP_537702.1| PREDICTED: similar to ( 525) 309 81.8 1.1e-13 gi|54036143|sp|Q8BSK8.1|KS6B1_MOUSE Ribosomal prot ( 525) 309 81.8 1.1e-13 gi|90076660|dbj|BAE88010.1| unnamed protein produc ( 525) 309 81.8 1.1e-13 gi|23512346|gb|AAH38491.1| Rps6kb1 protein [Mus mu ( 525) 309 81.8 1.1e-13 >>gi|62087234|dbj|BAD92064.1| ribosomal protein S6 kinas (127 aa) initn: 884 init1: 884 opt: 884 Z-score: 1152.0 bits: 218.7 E(): 1.6e-55 Smith-Waterman score: 884; 100.000% identity (100.000% similar) in 127 aa overlap (1-127:1-127) 10 20 30 40 50 60 hh1003 GSCWGRGEWSGEGELGSTGALSSLTPCVRRPVGHYEEVELTETSVNVGPERIGPHCFELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GSCWGRGEWSGEGELGSTGALSSLTPCVRRPVGHYEEVELTETSVNVGPERIGPHCFELL 10 20 30 40 50 60 70 80 90 100 110 120 hh1003 RVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKVSHSFSQRILCGCHSQHAVPGFGKTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKVSHSFSQRILCGCHSQHAVPGFGKTAG 70 80 90 100 110 120 hh1003 NTVEEDP ::::::: gi|620 NTVEEDP >>gi|194387128|dbj|BAG59930.1| unnamed protein product [ (154 aa) initn: 421 init1: 421 opt: 434 Z-score: 569.6 bits: 111.2 E(): 4.4e-23 Smith-Waterman score: 434; 80.682% identity (85.227% similar) in 88 aa overlap (8-93:16-103) 10 20 30 40 50 hh1003 GSCWGRGEWSGEGELGSTGA--LSSLTPCVRRPVGHYEEVELTETSVNVGPE : :: ::. . : :. : .:::::::::::::::::::: gi|194 MAAVFDLDLETEEGSEGEGEPELSPADACPLAELRAAGLEPVGHYEEVELTETSVNVGPE 10 20 30 40 50 60 60 70 80 90 100 110 hh1003 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKVSHSFSQRILCGCHSQH ::::::::::::::::::::::::::::::::::::::::::: gi|194 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKAKIVRNAKDTAHTRAER 70 80 90 100 110 120 120 hh1003 AVPGFGKTAGNTVEEDP gi|194 NILESVKHPFIVELAYAFQTGGKLYLILECLSVD 130 140 150 >>gi|119595026|gb|EAW74620.1| ribosomal protein S6 kinas (478 aa) initn: 421 init1: 421 opt: 434 Z-score: 562.8 bits: 111.6 E(): 1e-22 Smith-Waterman score: 434; 80.682% identity (85.227% similar) in 88 aa overlap (8-93:16-103) 10 20 30 40 50 hh1003 GSCWGRGEWSGEGELGSTGA--LSSLTPCVRRPVGHYEEVELTETSVNVGPE : :: ::. . : :. : .:::::::::::::::::::: gi|119 MAAVFDLDLETEEGSEGEGEPELSPADACPLAELRAAGLEPVGHYEEVELTETSVNVGPE 10 20 30 40 50 60 60 70 80 90 100 110 hh1003 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKVSHSFSQRILCGCHSQH ::::::::::::::::::::::::::::::::::::::::::: gi|119 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKAKIVRNAKDTAHTRAER 70 80 90 100 110 120 120 hh1003 AVPGFGKTAGNTVEEDP gi|119 NILESVKHPFIVELAYAFQTGGKLYLILECLSGGELFTHLEREGIFLEDTACFYLAEITL 130 140 150 160 170 180 >>gi|119595027|gb|EAW74621.1| ribosomal protein S6 kinas (482 aa) initn: 421 init1: 421 opt: 434 Z-score: 562.8 bits: 111.6 E(): 1.1e-22 Smith-Waterman score: 434; 80.682% identity (85.227% similar) in 88 aa overlap (8-93:16-103) 10 20 30 40 50 hh1003 GSCWGRGEWSGEGELGSTGA--LSSLTPCVRRPVGHYEEVELTETSVNVGPE : :: ::. . : :. : .:::::::::::::::::::: gi|119 MAAVFDLDLETEEGSEGEGEPELSPADACPLAELRAAGLEPVGHYEEVELTETSVNVGPE 10 20 30 40 50 60 60 70 80 90 100 110 hh1003 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKVSHSFSQRILCGCHSQH ::::::::::::::::::::::::::::::::::::::::::: gi|119 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKAKIVRNAKDTAHTRAER 70 80 90 100 110 120 120 hh1003 AVPGFGKTAGNTVEEDP gi|119 NILESVKHPFIVELAYAFQTGGKLYLILECLSGGELFTHLEREGIFLEDTACFYLAEITL 130 140 150 160 170 180 >>gi|12643872|sp|Q9UBS0.1|KS6B2_HUMAN Ribosomal protein (482 aa) initn: 421 init1: 421 opt: 434 Z-score: 562.8 bits: 111.6 E(): 1.1e-22 Smith-Waterman score: 434; 80.682% identity (85.227% similar) in 88 aa overlap (8-93:16-103) 10 20 30 40 50 hh1003 GSCWGRGEWSGEGELGSTGA--LSSLTPCVRRPVGHYEEVELTETSVNVGPE : :: ::. . : :. : .:::::::::::::::::::: gi|126 MAAVFDLDLETEEGSEGEGEPELSPADACPLAELRAAGLEPVGHYEEVELTETSVNVGPE 10 20 30 40 50 60 60 70 80 90 100 110 hh1003 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKVSHSFSQRILCGCHSQH ::::::::::::::::::::::::::::::::::::::::::: gi|126 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKAKIVRNAKDTAHTRAER 70 80 90 100 110 120 120 hh1003 AVPGFGKTAGNTVEEDP gi|126 NILESVKHPFIVELAYAFQTGGKLYLILECLSGGELFTHLEREGIFLEDTACFYLAEITL 130 140 150 160 170 180 >>gi|33303901|gb|AAQ02464.1| ribosomal protein S6 kinase (483 aa) initn: 421 init1: 421 opt: 434 Z-score: 562.8 bits: 111.6 E(): 1.1e-22 Smith-Waterman score: 434; 80.682% identity (85.227% similar) in 88 aa overlap (8-93:16-103) 10 20 30 40 50 hh1003 GSCWGRGEWSGEGELGSTGA--LSSLTPCVRRPVGHYEEVELTETSVNVGPE : :: ::. . : :. : .:::::::::::::::::::: gi|333 MAAVFDLDLETEEGSEGEGEPELSPADACPLAELRAAGLEPVGHYEEVELTETSVNVGPE 10 20 30 40 50 60 60 70 80 90 100 110 hh1003 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKVSHSFSQRILCGCHSQH ::::::::::::::::::::::::::::::::::::::::::: gi|333 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKAKIVRNAKDTAHTRAER 70 80 90 100 110 120 120 hh1003 AVPGFGKTAGNTVEEDP gi|333 NILESVKHPFIVELAYAFQTGGKLYLILECLSGGELFTHLEREGIFLEDTACFYLAEITL 130 140 150 160 170 180 >>gi|3882085|dbj|BAA34402.1| p70 ribosomal S6 kinase bet (495 aa) initn: 421 init1: 421 opt: 434 Z-score: 562.6 bits: 111.6 E(): 1.1e-22 Smith-Waterman score: 434; 80.682% identity (85.227% similar) in 88 aa overlap (8-93:29-116) 10 20 30 hh1003 GSCWGRGEWSGEGELGSTGA--LSSLTPCVRRPVGHYEE : :: ::. . : :. : .::::::: gi|388 MARGRRARGAGAAMAAVFDLDLETEEGSEGEGEPELSPADACPLAELRAAGLEPVGHYEE 10 20 30 40 50 60 40 50 60 70 80 90 hh1003 VELTETSVNVGPERIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKVSHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|388 VELTETSVNVGPERIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKAKIV 70 80 90 100 110 120 100 110 120 hh1003 FSQRILCGCHSQHAVPGFGKTAGNTVEEDP gi|388 RNAKDTAHTRAERNILESVKHPFIVELAYAFQTGGKLYLILECLSGGELFTHLEREGIFL 130 140 150 160 170 180 >>gi|114638836|ref|XP_001172909.1| PREDICTED: similar to (482 aa) initn: 417 init1: 417 opt: 430 Z-score: 557.6 bits: 110.7 E(): 2e-22 Smith-Waterman score: 430; 79.545% identity (85.227% similar) in 88 aa overlap (8-93:16-103) 10 20 30 40 50 hh1003 GSCWGRGEWSGEGELGSTGA--LSSLTPCVRRPVGHYEEVELTETSVNVGPE : :: ::. . : :. : .::::::::::::::::.::: gi|114 MAAVFDLDLETEEGSEGEGEPELSPADACPLAELRAAGLEPVGHYEEVELTETSVNLGPE 10 20 30 40 50 60 60 70 80 90 100 110 hh1003 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKVSHSFSQRILCGCHSQH ::::::::::::::::::::::::::::::::::::::::::: gi|114 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKAKIVRNAKDTAHTRAER 70 80 90 100 110 120 120 hh1003 AVPGFGKTAGNTVEEDP gi|114 NILESVKHPFIVELAYAFQTGGKLYLILECLSGGELFTHLEREGIFLEDTACFYLAEITL 130 140 150 160 170 180 >>gi|109105416|ref|XP_001117937.1| PREDICTED: similar to (512 aa) initn: 429 init1: 405 opt: 424 Z-score: 549.5 bits: 109.2 E(): 5.8e-22 Smith-Waterman score: 424; 77.528% identity (85.393% similar) in 89 aa overlap (7-93:42-130) 10 20 30 hh1003 GSCWGRGEWSGEGELGSTGA--LSSLTPCVRRPVGH :: :: ::.:. . .. : .:::: gi|109 EAGYGPRGPRGGASMAAVFDLDLETEEGSEGEGEGEPELSSADVCPFAELRAAGLEPVGH 20 30 40 50 60 70 40 50 60 70 80 90 hh1003 YEEVELTETSVNVGPERIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKV ::::::::::::. ::::::::::::::::::::::::::::::::::::::::::::: gi|109 YEEVELTETSVNLCPERIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKA 80 90 100 110 120 130 100 110 120 hh1003 SHSFSQRILCGCHSQHAVPGFGKTAGNTVEEDP gi|109 KIVRNAKDTAHTRAERNILESVKHPFIVELAYAFQTGGKLYLILECLSGGELFTHLEREG 140 150 160 170 180 190 >>gi|56611111|gb|AAH06106.3| Ribosomal protein S6 kinase (482 aa) initn: 407 init1: 407 opt: 420 Z-score: 544.7 bits: 108.3 E(): 1.1e-21 Smith-Waterman score: 420; 79.545% identity (84.091% similar) in 88 aa overlap (8-93:16-103) 10 20 30 40 50 hh1003 GSCWGRGEWSGEGELGSTGA--LSSLTPCVRRPVGHYEEVELTETSVNVGPE : :: ::. . : :. : .:::::::::::::::::::: gi|566 MAAVFDLDLETEEGSEGEGEPELSPADACPLAELRAAGLEPVGHYEEVELTETSVNVGPE 10 20 30 40 50 60 60 70 80 90 100 110 hh1003 RIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKVSHSFSQRILCGCHSQH ::::: ::::::::::::::::::::::::::::::::::::: gi|566 RIGPHSFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKAKIVRNAKDTAHTRAER 70 80 90 100 110 120 120 hh1003 AVPGFGKTAGNTVEEDP gi|566 NILESVKHPFIVELAYAFQTGGKLYLILECLSGGELFTHLEREGIFLEDTACFYLAEITL 130 140 150 160 170 180 127 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 10:29:52 2008 done: Tue Aug 12 10:32:59 2008 Total Scan time: 533.870 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]