hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20100205/iprscan-20100205-19013653/chunk_1/iprscan-20100205-19013653.nocrc
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Query sequence: hh11475
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF04433.7.ls    SWIRM domain                            155.5    1.3e-43   1
PF04433.7.fs    SWIRM domain                            153.5    5.1e-43   1
PF00249.21.fs   Myb-like DNA-binding domain              45.6    1.7e-11   1
PF00249.21.ls   Myb-like DNA-binding domain              47.3    4.8e-11   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF04433.7.fs      1/1     455   543 ..     1    95 []   153.5  5.1e-43
PF04433.7.ls      1/1     455   543 ..     1    95 []   155.5  1.3e-43
PF00249.21.fs     1/1     626   671 ..     1    65 []    45.6  1.7e-11
PF00249.21.ls     1/1     626   671 ..     1    65 []    47.3  4.8e-11

Alignments of top-scoring domains:
PF04433.7.fs: domain 1 of 1, from 455 to 543: score 153.5, E = 5.1e-43
                   *->lkeasyaswldlsaltpiEllsepEfflgktlsgrktpevYLviRns
                      ++++syasw+d++ +++iE++ +pEff+gk  +++ktpe YL++Rn+
     hh11475   455    IIIPSYASWFDYNCIHVIERRALPEFFNGK--NKSKTPEIYLAYRNF 499  

                   iislwrlnptkyltktdarrnlagpfnsDvnlvsrvydFLerwGyINy<-
                   +i+++rlnp++ylt t++rrnl+g    Dv++v+rv++FLe+wG+ Ny  
     hh11475   500 MIDTYRLNPQEYLTSTACRRNLTG----DVCAVMRVHAFLEQWGLVNY   543  

                   *
                    
     hh11475     -   -    

PF04433.7.ls: domain 1 of 1, from 455 to 543: score 155.5, E = 1.3e-43
                   *->lkeasyaswldlsaltpiEllsepEfflgktlsgrktpevYLviRns
                      ++++syasw+d++ +++iE++ +pEff+gk  +++ktpe YL++Rn+
     hh11475   455    IIIPSYASWFDYNCIHVIERRALPEFFNGK--NKSKTPEIYLAYRNF 499  

                   iislwrlnptkyltktdarrnlagpfnsDvnlvsrvydFLerwGyINy<-
                   +i+++rlnp++ylt t++rrnl+g    Dv++v+rv++FLe+wG+ Ny  
     hh11475   500 MIDTYRLNPQEYLTSTACRRNLTG----DVCAVMRVHAFLEQWGLVNY   543  

                   *
                    
     hh11475     -   -    

PF00249.21.fs: domain 1 of 1, from 626 to 671: score 45.6, E = 1.7e-11
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      + +Wt++E+ ll+ea+e++  +           W+k++e++g     
     hh11475   626    GREWTEQETLLLLEALEMYKDD-----------WNKVSEHVG----- 656  

                   nvlgrtaeqcklryykyk<-*
                      +rt  +c+l+++++    
     hh11475   657 ---SRTQDECILHFLRLP    671  

PF00249.21.ls: domain 1 of 1, from 626 to 671: score 47.3, E = 4.8e-11
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      + +Wt++E+ ll+ea+e++  +           W+k++e++g     
     hh11475   626    GREWTEQETLLLLEALEMYKDD-----------WNKVSEHVG----- 656  

                   nvlgrtaeqcklryykyk<-*
                      +rt  +c+l+++++    
     hh11475   657 ---SRTQDECILHFLRLP    671  

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