hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20100205/iprscan-20100205-19013653/chunk_1/iprscan-20100205-19013653.nocrc
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Query sequence: hh11475
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00717                                                  55.3      8e-12   1
SM00298                                                  26.3     0.0043   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00298    1/1     221   267 ..     1    63 []    26.3   0.0043
SM00717    1/1     625   673 ..     1    53 []    55.3    8e-12

Alignments of top-scoring domains:
SM00298: domain 1 of 1, from 221 to 267: score 26.3, E = 0.0043
                   *->eyeivEkIldhrwekkkgeveYLVKWkGysysedtWEpeenleemLk
                      ++e + + ++++      e++ LV+W  y++s+dtW+  ++++    
     hh11475   221    DEE-WLRPVMRK------EKQVLVHWGFYPDSYDTWVHSNDVD---- 256  

                   kkncekkldeykkrek<-*
                         ++++    ek   
     hh11475   257 -----AEIEDPPIPEK    267  

SM00717: domain 1 of 1, from 625 to 673: score 55.3, E = 8e-12
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                       ++eWte+E+ lLlea+++y     +dW+k+++++++Rt  +c++++
     hh11475   625    AGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHF 667  

                   rnllkp<-*
                    +l      
     hh11475   668 LRLPIE    673  

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