hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-10452520/chunk_1/iprscan-20080812-10452520.nocrc
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Query sequence: hh11923
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08169.2.fs RBB1NT (NUC162) domain                         275.1    1.9e-83   1
PF08169.2.ls RBB1NT (NUC162) domain                         277.0    3.3e-80   1
PF01388.11.ls ARID/BRIGHT DNA binding domain                 140.7    3.7e-39   1
PF01388.11.fs ARID/BRIGHT DNA binding domain                 138.7    1.4e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08169.2.fs   1/1     179   277 ..     1    99 []   275.1  1.9e-83
PF08169.2.ls   1/1     179   277 ..     1    99 []   277.0  3.3e-80
PF01388.11.fs   1/1     316   426 ..     1   116 []   138.7  1.4e-38
PF01388.11.ls   1/1     316   426 ..     1   116 []   140.7  3.7e-39

Alignments of top-scoring domains:
PF08169.2.fs: domain 1 of 1, from 179 to 277: score 275.1, E = 1.9e-83
                   *->RrlnDeLLGKVvcVDYissdkekalWfPaLVisPsCnDditVKKDqc
                      R+++DeLLGKVvcVDYis+dk+kalWfPaLV++P+C+D+i+VKKD++
     hh11923   179    RKQIDELLGKVVCVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNI 225  

                   LVRSFkDsKFtSVaRKDVkEvdidtlpkpelslkkglekAklFlksRtiP
                   LVRSFkD+KFtSV+RKDV+E+++dt+pkp+++lk+++e+A++F+ksRtiP
     hh11923   226 LVRSFKDGKFTSVPRKDVHEITSDTAPKPDAVLKQAFEQALEFHKSRTIP 275  

                   dn<-*
                   +n   
     hh11923   276 AN    277  

PF08169.2.ls: domain 1 of 1, from 179 to 277: score 277.0, E = 3.3e-80
                   *->RrlnDeLLGKVvcVDYissdkekalWfPaLVisPsCnDditVKKDqc
                      R+++DeLLGKVvcVDYis+dk+kalWfPaLV++P+C+D+i+VKKD++
     hh11923   179    RKQIDELLGKVVCVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNI 225  

                   LVRSFkDsKFtSVaRKDVkEvdidtlpkpelslkkglekAklFlksRtiP
                   LVRSFkD+KFtSV+RKDV+E+++dt+pkp+++lk+++e+A++F+ksRtiP
     hh11923   226 LVRSFKDGKFTSVPRKDVHEITSDTAPKPDAVLKQAFEQALEFHKSRTIP 275  

                   dn<-*
                   +n   
     hh11923   276 AN    277  

PF01388.11.fs: domain 1 of 1, from 316 to 426: score 138.7, E = 1.4e-38
                   *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke
                      e  ++er++Fl++L+kFme+rgtp++k Pv+g++ L+L++L+rlV +
     hh11923   316    EPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHK 362  

                   kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE
                    GGf+++ ++++W++++++Lgip  +s     +ag++ + +Y +yLy+fE
     hh11923   363 LGGFDNIESGAVWKQVYQDLGIPVLNS-----AAGYNVKCAYKKYLYGFE 407  

                   cyeeeenlrdeteaaddme<-*
                   +y++++n+++  + +++ +   
     hh11923   408 EYCRSANIEFQMALPEKVV    426  

PF01388.11.ls: domain 1 of 1, from 316 to 426: score 140.7, E = 3.7e-39
                   *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke
                      e  ++er++Fl++L+kFme+rgtp++k Pv+g++ L+L++L+rlV +
     hh11923   316    EPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHK 362  

                   kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE
                    GGf+++ ++++W++++++Lgip  +s     +ag++ + +Y +yLy+fE
     hh11923   363 LGGFDNIESGAVWKQVYQDLGIPVLNS-----AAGYNVKCAYKKYLYGFE 407  

                   cyeeeenlrdeteaaddme<-*
                   +y++++n+++  + +++ +   
     hh11923   408 EYCRSANIEFQMALPEKVV    426  

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