hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-10452520/chunk_1/iprscan-20080812-10452520.nocrc
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Query sequence: hh11923
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00501                                                 135.2      7e-36   1
SM00333                                                  45.7    6.3e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00333    1/2      71   127 ..     1    60 []    45.5  7.3e-09
SM00501    1/1     320   412 ..     1    95 []   135.2    7e-36
SM00333    2/2     580   645 ..     1    60 []     0.2       81

Alignments of top-scoring domains:
SM00333: domain 1 of 2, from 71 to 127: score 45.5, E = 7.3e-09
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                      +++kvG++v ++   Dg++++A I k +++ ++y+V+f+D G+e+++
     hh11923    71    GPLKVGAIVEVKNL-DGAYQEAVINKLTDA-SWYTVVFDD-GDEKTL 114  

                   plsdlrqlpekfa<-*
                   ++s+l+++ e ++   
     hh11923   115 RRSSLCLKGERHF    127  

SM00501: domain 1 of 1, from 320 to 412: score 135.2, E = 7e-36
                   *->rerelFldrLykFmeergtpilkiPviggkpklDLyrLyrlVkerGG
                      +ere+Fl++LykFme rgtpi+k Pv+g++  l+L++L+rlV ++GG
     hh11923   320    EERENFLQQLYKFMEDRGTPINKRPVLGYRN-LNLFKLFRLVHKLGG 365  

                   ydaVtkdkkWkeiaeelgipdtistsasssLrkhYlryLlpfEeflrg<-
                   +d++  +  Wk++++ lgip   +++a+++ + +Y +yL+ fEe++r+  
     hh11923   366 FDNIESGAVWKQVYQDLGIPVL-NSAAGYNVKCAYKKYLYGFEEYCRS   412  

                   *
                    
     hh11923     -   -    

SM00333: domain 2 of 2, from 580 to 645: score 0.2, E = 81
                   *->pkfkvGdlvaarwse..DgewYrArIikvdse..nqlyeVffiDyGn
                      ++   G++v++r+  ++++ +Y+A I++ d e++  ly V++  +  
     hh11923   580    ECYPPGMKVQVRYGRgkNQKMYEASIKDSDVEggEVLYLVHYCGWNV 626  

                   e..evvplsdlrqlpekfa<-*
                   + +e+++ +++ + + k     
     hh11923   627 RydEWIKADKIVRPADKNV    645  

//