hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-10512497/chunk_1/iprscan-20080812-10512497.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh11925 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00536.20.fs SAM domain (Sterile alpha motif) 147.9 5.9e-43 4 PF07647.7.fs SAM domain (Sterile alpha motif) 139.9 2.2e-40 3 PF07647.7.ls SAM domain (Sterile alpha motif) 140.5 4.2e-39 3 PF00536.20.ls SAM domain (Sterile alpha motif) 138.2 2.1e-38 2 PF02920.6.ls DNA binding domain of tn916 integrase 112.8 9.4e-31 1 PF02920.6.fs DNA binding domain of tn916 integrase 110.8 3.6e-30 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02920.6.fs 1/1 122 186 .. 1 67 [] 110.8 3.6e-30 PF02920.6.ls 1/1 122 186 .. 1 67 [] 112.8 9.4e-31 PF07647.7.ls 1/3 496 563 .. 1 72 [] 40.7 4.6e-09 PF07647.7.fs 1/3 496 563 .. 1 72 [] 38.8 1e-10 PF00536.20.ls 1/2 497 561 .. 1 65 [] 72.9 9.6e-19 PF00536.20.fs 2/4 497 561 .. 1 65 [] 70.9 3e-20 PF07647.7.ls 2/3 568 634 .. 1 72 [] 27.7 3.9e-05 PF00536.20.fs 3/4 572 632 .. 1 65 [] 63.4 4.9e-18 PF00536.20.ls 2/2 572 632 .. 1 65 [] 65.3 1.8e-16 PF07647.7.fs 2/3 576 634 .. 9 72 .] 31.1 1.9e-08 PF07647.7.ls 3/3 656 728 .. 1 72 [] 72.1 1.6e-18 PF07647.7.fs 3/3 656 728 .. 1 72 [] 70.1 6.6e-20 Alignments of top-scoring domains: PF02920.6.fs: domain 1 of 1, from 122 to 186: score 110.8, E = 3.6e-30 *->EkrrdekervlrkgEsqrkdlRYlykyvdelgeprFvYsWKLvatda Ek+++e+e+++rk+E+++++lR+l+++v+el+++r++Y+WKL+at+a hh11925 122 EKEQREQEEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKA 168 epagkreciaLRekdkEIqK<-* e+a+++e++aL kd+EI++ hh11925 169 EVAQLQEQVAL--KDAEIER 186 PF02920.6.ls: domain 1 of 1, from 122 to 186: score 112.8, E = 9.4e-31 *->EkrrdekervlrkgEsqrkdlRYlykyvdelgeprFvYsWKLvatda Ek+++e+e+++rk+E+++++lR+l+++v+el+++r++Y+WKL+at+a hh11925 122 EKEQREQEEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKA 168 epagkreciaLRekdkEIqK<-* e+a+++e++aL kd+EI++ hh11925 169 EVAQLQEQVAL--KDAEIER 186 PF07647.7.ls: domain 1 of 3, from 496 to 563: score 40.7, E = 4.6e-09 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +ws+e+v++WLe gl +qY +F +q +++++ l l t +d+ hh11925 496 FAQWSTERVCAWLEDFGL-AQY-VIFARQWVSSGHTL-LTATPQDM- 538 klalGitsvghRkkilkkiqelkqq<-* + +lGi + hRkk+ +++ + + hh11925 539 EKELGIKHPLHRKKLVLAVKAINTK 563 PF07647.7.fs: domain 1 of 3, from 496 to 563: score 38.8, E = 1e-10 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +ws+e+v++WLe gl +qY +F +q +++++ l l t +d+ hh11925 496 FAQWSTERVCAWLEDFGL-AQY-VIFARQWVSSGHTL-LTATPQDM- 538 klalGitsvghRkkilkkiqelkqq<-* + +lGi + hRkk+ +++ + + hh11925 539 EKELGIKHPLHRKKLVLAVKAINTK 563 PF00536.20.ls: domain 1 of 2, from 497 to 561: score 72.9, E = 9.6e-19 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l +ws e V+ WLe++gl+qY+ +++ ++g+tll+ t++D+e++l hh11925 497 AQWSTERVCAWLEDFGLAQYVIFA-RQWVSSGHTLLTATPQDMEKeL 542 GvtllGHrkKIlssIqgLk<-* G++++ HrkK++++++ hh11925 543 GIKHPLHRKKLVLAVKAIN 561 PF00536.20.fs: domain 2 of 4, from 497 to 561: score 70.9, E = 3e-20 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l +ws e V+ WLe++gl+qY+ +++ ++g+tll+ t++D+e++l hh11925 497 AQWSTERVCAWLEDFGLAQYVIFA-RQWVSSGHTLLTATPQDMEKeL 542 GvtllGHrkKIlssIqgLk<-* G++++ HrkK++++++ hh11925 543 GIKHPLHRKKLVLAVKAIN 561 PF07647.7.ls: domain 2 of 3, from 568 to 634: score 27.7, E = 3.9e-05 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa + v+ WL+ igl +qYkd F + ++g ++l ++lt +dL hh11925 568 SALLDHIWVTRWLDDIGL-PQYKDQFHESRVDG-RML-QYLTVNDL- 610 klalGitsvghRkkilkkiqelkqq<-* + l++ts+ h + i ++i l + hh11925 611 L-FLKVTSQLHHLSIKCAIHVLHVN 634 PF00536.20.fs: domain 3 of 4, from 572 to 632: score 63.4, E = 4.9e-18 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d+ V WL++igl+qY+d+F ++dg++l lt +DL+ l+ hh11925 572 DH---IWVTRWLDDIGLPQYKDQF-HESRVDGRMLQYLTVNDLLFLK 614 vtllGHrkKIlssIqgLk<-* vt+ H++ I ++I+ L+ hh11925 615 VTSQLHHLSIKCAIHVLH 632 PF00536.20.ls: domain 2 of 2, from 572 to 632: score 65.3, E = 1.8e-16 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d+ V WL++igl+qY+d+F ++dg++l lt +DL+ l+ hh11925 572 DH---IWVTRWLDDIGLPQYKDQF-HESRVDGRMLQYLTVNDLLFLK 614 vtllGHrkKIlssIqgLk<-* vt+ H++ I ++I+ L+ hh11925 615 VTSQLHHLSIKCAIHVLH 632 PF07647.7.fs: domain 2 of 3, from 576 to 634: score 31.1, E = 1.9e-08 *->vaeWLesiglegqYkdnFsdqgitglellllrlteedLaklalGits v+ WL+ igl +qYkd F + ++g ++l ++lt +dL + l++ts hh11925 576 VTRWLDDIGL-PQYKDQFHESRVDG-RML-QYLTVNDL-L-FLKVTS 617 vghRkkilkkiqelkqq<-* + h + i ++i l + hh11925 618 QLHHLSIKCAIHVLHVN 634 PF07647.7.ls: domain 3 of 3, from 656 to 728: score 72.1, E = 1.6e-18 *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL v++ws+++v+eWL+s++l ++Y++n+++ g++g+ ++l++r+t ++L hh11925 656 VVQWSNHRVMEWLRSVDL-AEYAPNLRGSGVHGGLIILePRFTGDTL 701 a.klalGitsvghRkkilkkiqelkqq<-* a +l ++++++ R+++ +k++ l+++ hh11925 702 AmLLNIPPQKTLLRRHLTTKFNALIGP 728 PF07647.7.fs: domain 3 of 3, from 656 to 728: score 70.1, E = 6.6e-20 *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL v++ws+++v+eWL+s++l ++Y++n+++ g++g+ ++l++r+t ++L hh11925 656 VVQWSNHRVMEWLRSVDL-AEYAPNLRGSGVHGGLIILePRFTGDTL 701 a.klalGitsvghRkkilkkiqelkqq<-* a +l ++++++ R+++ +k++ l+++ hh11925 702 AmLLNIPPQKTLLRRHLTTKFNALIGP 728 //