hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-10512497/chunk_1/iprscan-20080812-10512497.nocrc
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Query sequence: hh11925
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00454                                                 148.7    5.8e-40   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00454    1/3     496   563 ..     1    67 []    62.0  7.7e-14
SM00454    2/3     568   634 ..     1    67 []    45.6  6.4e-09
SM00454    3/3     656   728 ..     1    67 []    41.1  1.5e-07

Alignments of top-scoring domains:
SM00454: domain 1 of 3, from 496 to 563: score 62.0, E = 7.7e-14
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      + +ws e V++WLe  gl+qY+   r++  +g+ ll  t +++ kel
     hh11925   496    FAqWSTERVCAWLEDFGLAQYVIFARQWVSSGHTLLTATPQDMEKEL 542  

                   GitllGhRkkIlsaiqklkeq<-*
                   Gi+ + hRkk+  a++ + +    
     hh11925   543 GIKHPLHRKKLVLAVKAINTK    563  

SM00454: domain 2 of 3, from 568 to 634: score 45.6, E = 6.4e-09
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                          +   V +WL+ igl+qY+d+F + ++dg++l  lt  +dL+ l
     hh11925   568    SAlLDHIWVTRWLDDIGLPQYKDQFHESRVDGRMLQYLT-VNDLLFL 613  

                   GitllGhRkkIlsaiqklkeq<-*
                   ++t+  h++ I +ai+ l  +   
     hh11925   614 KVTSQLHHLSIKCAIHVLHVN    634  

SM00454: domain 3 of 3, from 656 to 728: score 41.1, E = 1.5e-07
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.....see
                      v +ws++ V eWL+s +l++Ya+n+r  g++g + +l+ + ++++++
     hh11925   656    VVqWSNHRVMEWLRSVDLAEYAPNLRGSGVHGGLIILEPrftgdTLA 702  

                   dLkelGitllGhRkkIlsaiqklkeq<-*
                   +L+++  +++  R+ +  +++ l  +   
     hh11925   703 MLLNIPPQKTLLRRHLTTKFNALIGP    728  

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