hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-10572399/chunk_1/iprscan-20080812-10572399.nocrc
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Query sequence: hh11934
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02134.11.ls Repeat in ubiquitin-activating (UBA) protein   129.6      8e-36   1
PF02134.11.fs Repeat in ubiquitin-activating (UBA) protein   129.3    9.7e-36   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02134.11.fs   1/1       1    68 [.     4    75 .]   129.3  9.7e-36
PF02134.11.ls   1/1       1    68 [.     1    75 []   129.6    8e-36

Alignments of top-scoring domains:
PF02134.11.fs: domain 1 of 1, from 1 to 68: score 129.3, E = 9.7e-36
                   *->kDDdsplHmdFvtaaAnlRAenygIpgpvdrfkikgiagnIkIPAiA
                      kDD  p++mdFvt aAnlR++++++  +++rf+ik +agnI IPAiA
     hh11934     1    KDD--PSAMDFVTSAANLRMHIFSMN-MKSRFDIKSMAGNI-IPAIA 43   

                   tTNAvvAGlcclEavKvltgdadel<-*
                   tTNAv+AGl++lE +K+l+g++d++   
     hh11934    44 TTNAVIAGLIVLEGLKILSGKIDQC    68   

PF02134.11.ls: domain 1 of 1, from 1 to 68: score 129.6, E = 8e-36
                   *->eFDkDDdsplHmdFvtaaAnlRAenygIpgpvdrfkikgiagnIkIP
                         kDD  p++mdFvt aAnlR++++++  +++rf+ik +agnI IP
     hh11934     1    ---KDD--PSAMDFVTSAANLRMHIFSMN-MKSRFDIKSMAGNI-IP 40   

                   AiAtTNAvvAGlcclEavKvltgdadel<-*
                   AiAtTNAv+AGl++lE +K+l+g++d++   
     hh11934    41 AIATTNAVIAGLIVLEGLKILSGKIDQC    68   

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