hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-11025112/chunk_1/iprscan-20080812-11025112.nocrc
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Query sequence: hh11957
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02219.7.ls Methylenetetrahydrofolate reductase            656.3   2.2e-194   1
PF02219.7.fs Methylenetetrahydrofolate reductase            654.4   8.3e-194   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02219.7.fs   1/1      78   367 ..     1   316 []   654.4 8.3e-194
PF02219.7.ls   1/1      78   367 ..     1   316 []   656.3 2.2e-194

Alignments of top-scoring domains:
PF02219.7.fs: domain 1 of 1, from 78 to 367: score 654.4, E = 8.3e-194
                   *->kirqildeegkffySfEFFPPKTenGernLweRidRmsalglPlFVd
                      k+r++l+ +g++++S+EFFPP+T++G+ nL++R+dRm+a+g Pl++d
     hh11957    78    KMRRRLE-SGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGG-PLYID 122  

                   VTWGAGGDPavstrdlTlsiastiqqetgleacmHLTCtnmskeeiddaL
                   VTW+++GDP++++++++++iast+++++gle+++H+TC+++++eei+ +L
     hh11957   123 VTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHL 172  

                   edakelGiRNILALRGDPPkgtdhdweepeggleFkYAlDLVryIRsGLD
                   ++ak+lG++NI+ALRGD P+g++  wee+egg  F+YA+DLV++IRs   
     hh11957   173 HKAKQLGLKNIMALRGD-PIGDQ--WEEEEGG--FNYAVDLVKHIRS--- 214  

                   FeyGDyFdIGVAgYPGAEgHPdseaEeeakswqaDlkyLkeKvdAGADFi
                    e+GDyFdI+VAgYP  +gHP      ea+s++aDlk+LkeKv+AGADFi
     hh11957   215 -EFGDYFDICVAGYP--KGHP------EAGSFEADLKHLKEKVSAGADFI 255  

                   ITQlFfDvDnflrFvdrvraaGinLrdiPIiPGIMPItsykslkRmakls
                   ITQlFf++D+f+rFv++++++Gi   ++PI+PGI+PI++y+sl++++kls
     hh11957   256 ITQLFFEADTFFRFVKACTDMGI---TCPIVPGIFPIQGYHSLRQLVKLS 302  

                   PgvsIPqelmdrLePpikdDDeavkkiGielavemckkLlasGsGrVpgl
                    ++++Pqe++d++e pikd+D+a++++Gielav++c++LlasG  +Vpgl
     hh11957   303 -KLEVPQEIKDVIE-PIKDNDAAIRNYGIELAVSLCQELLASG--LVPGL 348  

                   HFYTLNrEkatleIlenLG<-*
                   HFYTLNrE+at+e+l++LG   
     hh11957   349 HFYTLNREMATTEVLKRLG    367  

PF02219.7.ls: domain 1 of 1, from 78 to 367: score 656.3, E = 2.2e-194
                   *->kirqildeegkffySfEFFPPKTenGernLweRidRmsalglPlFVd
                      k+r++l+ +g++++S+EFFPP+T++G+ nL++R+dRm+a+g Pl++d
     hh11957    78    KMRRRLE-SGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGG-PLYID 122  

                   VTWGAGGDPavstrdlTlsiastiqqetgleacmHLTCtnmskeeiddaL
                   VTW+++GDP++++++++++iast+++++gle+++H+TC+++++eei+ +L
     hh11957   123 VTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHL 172  

                   edakelGiRNILALRGDPPkgtdhdweepeggleFkYAlDLVryIRsGLD
                   ++ak+lG++NI+ALRGD P+g++  wee+egg  F+YA+DLV++IRs   
     hh11957   173 HKAKQLGLKNIMALRGD-PIGDQ--WEEEEGG--FNYAVDLVKHIRS--- 214  

                   FeyGDyFdIGVAgYPGAEgHPdseaEeeakswqaDlkyLkeKvdAGADFi
                    e+GDyFdI+VAgYP  +gHP      ea+s++aDlk+LkeKv+AGADFi
     hh11957   215 -EFGDYFDICVAGYP--KGHP------EAGSFEADLKHLKEKVSAGADFI 255  

                   ITQlFfDvDnflrFvdrvraaGinLrdiPIiPGIMPItsykslkRmakls
                   ITQlFf++D+f+rFv++++++Gi   ++PI+PGI+PI++y+sl++++kls
     hh11957   256 ITQLFFEADTFFRFVKACTDMGI---TCPIVPGIFPIQGYHSLRQLVKLS 302  

                   PgvsIPqelmdrLePpikdDDeavkkiGielavemckkLlasGsGrVpgl
                    ++++Pqe++d++e pikd+D+a++++Gielav++c++LlasG  +Vpgl
     hh11957   303 -KLEVPQEIKDVIE-PIKDNDAAIRNYGIELAVSLCQELLASG--LVPGL 348  

                   HFYTLNrEkatleIlenLG<-*
                   HFYTLNrE+at+e+l++LG   
     hh11957   349 HFYTLNREMATTEVLKRLG    367  

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