hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-11174921/chunk_1/iprscan-20080812-11174921.nocrc
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Query sequence: hh12035
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08628.2.ls Sorting nexin C terminal                       152.4    1.1e-42   1
PF08628.2.fs Sorting nexin C terminal                       150.6    3.8e-42   1
PF00787.14.fs PX domain                                       97.5      3e-29   1
PF00787.14.ls PX domain                                       99.3    1.1e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00787.14.fs   1/1     133   242 ..     1   131 []    97.5    3e-29
PF00787.14.ls   1/1     133   242 ..     1   131 []    99.3  1.1e-26
PF08628.2.fs   1/1     363   468 ..     1   128 []   150.6  3.8e-42
PF08628.2.ls   1/1     363   468 ..     1   128 []   152.4  1.1e-42

Alignments of top-scoring domains:
PF00787.14.fs: domain 1 of 1, from 133 to 242: score 97.5, E = 3e-29
                   *->dpilivvvvdpetsrkkegdkkhtyyvyevttktn.......kewsV
                      dp++++++  ++           +++ + v++++++  ++++++wsV
     hh12035   133    DPSSERKEKKER----------IPVFCIDVERNDRravghepEHWSV 169  

                   kRRYsdFeeLhekLlrkfpgrilPplPpKklfgryrkeslpmtsvwhssn
                   +RRY +F+ L +kL++++++ +   lP+K+++g                 
     hh12035   170 YRRYLEFYVLESKLTEFHGAFPDAQLPSKRIIGP---------------- 203  

                   nfdeefiekRrkgLeeyLqrllqhPelsnesevvleFLesd<-*
                    ++ ef+++ r+ ++eyLq+llqhPelsn s ++++FL+++   
     hh12035   204 -KNYEFLKSKREEFQEYLQKLLQHPELSN-SQLLADFLSPN    242  

PF00787.14.ls: domain 1 of 1, from 133 to 242: score 99.3, E = 1.1e-26
                   *->dpilivvvvdpetsrkkegdkkhtyyvyevttktn.......kewsV
                      dp++++++  ++           +++ + v++++++  ++++++wsV
     hh12035   133    DPSSERKEKKER----------IPVFCIDVERNDRravghepEHWSV 169  

                   kRRYsdFeeLhekLlrkfpgrilPplPpKklfgryrkeslpmtsvwhssn
                   +RRY +F+ L +kL++++++ +   lP+K+++g                 
     hh12035   170 YRRYLEFYVLESKLTEFHGAFPDAQLPSKRIIGP---------------- 203  

                   nfdeefiekRrkgLeeyLqrllqhPelsnesevvleFLesd<-*
                    ++ ef+++ r+ ++eyLq+llqhPelsn s ++++FL+++   
     hh12035   204 -KNYEFLKSKREEFQEYLQKLLQHPELSN-SQLLADFLSPN    242  

PF08628.2.fs: domain 1 of 1, from 363 to 468: score 150.6, E = 3.8e-42
                   *->WLRGRalivvlqsllkqtlGPSLsTIekkirdsvedrltseerlvsy
                      WL  ++l+++ ++l+k+tl+    +++ ++++++e +l++e+rlvs+
     hh12035   363    WL--HHLLMGTRILFKNTLE---MYTDYYLQCKLE-QLFQEHRLVSL 403  

                   lsllrdslWcedlfPgGeeLasppppqeRseeekertrkaAkivqlLilr
                   ++llrd+++ce    ++          +Rs+++k++ +k+++  +++ ++
     hh12035   404 ITLLRDAIFCE---NTE----------PRSLQDKQKGAKQTF--EEM-MN 437  

                   llPdalgkvvGrenareairriFdmLQnprL<-*
                   ++Pd+l+k++G+e+++e+ir++Fd+LQ+p+L   
     hh12035   438 YIPDLLVKCIGEETKYESIRLLFDGLQQPVL    468  

PF08628.2.ls: domain 1 of 1, from 363 to 468: score 152.4, E = 1.1e-42
                   *->WLRGRalivvlqsllkqtlGPSLsTIekkirdsvedrltseerlvsy
                      WL  ++l+++ ++l+k+tl+    +++ ++++++e +l++e+rlvs+
     hh12035   363    WL--HHLLMGTRILFKNTLE---MYTDYYLQCKLE-QLFQEHRLVSL 403  

                   lsllrdslWcedlfPgGeeLasppppqeRseeekertrkaAkivqlLilr
                   ++llrd+++ce    ++          +Rs+++k++ +k+++  +++ ++
     hh12035   404 ITLLRDAIFCE---NTE----------PRSLQDKQKGAKQTF--EEM-MN 437  

                   llPdalgkvvGrenareairriFdmLQnprL<-*
                   ++Pd+l+k++G+e+++e+ir++Fd+LQ+p+L   
     hh12035   438 YIPDLLVKCIGEETKYESIRLLFDGLQQPVL    468  

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