hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-11174921/chunk_1/iprscan-20080812-11174921.nocrc
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Query sequence: hh12035
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00312                                                  58.6    7.9e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00312    1/1     123   242 ..     1   142 []    58.6  7.9e-13

Alignments of top-scoring domains:
SM00312: domain 1 of 1, from 123 to 242: score 58.6, E = 7.9e-13
                   *->dniaivavveeetsgkkrgdgkhyyyvieietstned....veewtv
                       +i  v   e+++s++k  +  + ++ i +e+++    +++ e+w+v
     hh12035   123    ISIPYVDFFEDPSSERKEKKERIPVFCIDVERNDRRAvghePEHWSV 169  

                   yRRYsdFleLhskLlkkfpqekrrriiPplPekkllgryreraekesmkv
                   yRRY +F+ L skL ++++         +lP+k ++g             
     hh12035   170 YRRYLEFYVLESKLTEFHG----AFPDAQLPSKRIIGP------------ 203  

                   kkslnnfseefiekRrrgLerYLqkllnhPelinhyrvsevvleFLess<
                         ++ ef+   r+ +++YLqkll+hPel+n    s ++++FL+++ 
     hh12035   204 ------KNYEFLKSKREEFQEYLQKLLQHPELSN----SQLLADFLSPN  242  

                   -*
                     
     hh12035     -    -    

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