hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-11240272/chunk_1/iprscan-20080812-11240272.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh12762 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02194.6.ls PXA domain 383.4 3.2e-112 1 PF02194.6.fs PXA domain 381.5 1.2e-111 1 PF08628.2.ls Sorting nexin C terminal 167.0 4.4e-47 1 PF08628.2.fs Sorting nexin C terminal 165.2 1.6e-46 1 PF00787.14.fs PX domain 105.4 1.2e-31 1 PF00787.14.ls PX domain 107.2 4.5e-29 1 PF00615.9.fs Regulator of G protein signaling domain 34.1 1e-08 1 PF00615.9.ls Regulator of G protein signaling domain 24.2 2.1e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02194.6.ls 1/1 164 351 .. 1 204 [] 383.4 3.2e-112 PF02194.6.fs 1/1 164 351 .. 1 204 [] 381.5 1.2e-111 PF00615.9.ls 1/1 440 580 .. 1 143 [] 24.2 2.1e-06 PF00615.9.fs 1/1 507 563 .. 61 128 .. 34.1 1e-08 PF00787.14.fs 1/1 630 743 .. 1 131 [] 105.4 1.2e-31 PF00787.14.ls 1/1 630 743 .. 1 131 [] 107.2 4.5e-29 PF08628.2.fs 1/1 859 970 .. 1 128 [] 165.2 1.6e-46 PF08628.2.ls 1/1 859 970 .. 1 128 [] 167.0 4.4e-47 Alignments of top-scoring domains: PF02194.6.ls: domain 1 of 1, from 164 to 351: score 383.4, E = 3.2e-112 *->eaqLekeLnsiIskilrdYVqsWYkKisvSeDasFlkeieqtlksil +++++++L+++I+++lrdYVq+WY+ ++S+D+sFl+ei+qtl+++l hh12762 164 ANIIDEPLQQVIQFSLRDYVQYWYY--TLSDDESFLLEIRQTLQNAL 208 lelkkrlskqDsaslivlklyeilkklistiedakEAvlrkaspqekite +++++r++++D+++++ +++i+++++++++ v+rka q+kite hh12762 209 IQFATRSKEIDWQPYF---TTRIVDDFGTHLR-----VFRKA--QQKITE 248 idlqyketaedNYKphkaLekkenEltKEvCRDLvCtsPKDEEkylRklv +d+q+k+taed ++++++++e+E++KEvCRDLvCtsPKDEE++lR+l+ hh12762 249 KDDQVKGTAED---LVDTFFEVEVEMEKEVCRDLVCTSPKDEEGFLRDLC 295 elLLkfLlPedelesklvGrvllrEvLAtvvilplIsklSdPdfinlvii e+LL++LlP++++++k++ r+++rE+LA++++lplI++lSdPd+in+++i hh12762 296 EVLLYLLLPPGDFQNKIM-RYFVREILARGILLPLINQLSDPDYINQYVI 344 llfskse<-* +++++s+ hh12762 345 WMIRDSN 351 PF02194.6.fs: domain 1 of 1, from 164 to 351: score 381.5, E = 1.2e-111 *->eaqLekeLnsiIskilrdYVqsWYkKisvSeDasFlkeieqtlksil +++++++L+++I+++lrdYVq+WY+ ++S+D+sFl+ei+qtl+++l hh12762 164 ANIIDEPLQQVIQFSLRDYVQYWYY--TLSDDESFLLEIRQTLQNAL 208 lelkkrlskqDsaslivlklyeilkklistiedakEAvlrkaspqekite +++++r++++D+++++ +++i+++++++++ v+rka q+kite hh12762 209 IQFATRSKEIDWQPYF---TTRIVDDFGTHLR-----VFRKA--QQKITE 248 idlqyketaedNYKphkaLekkenEltKEvCRDLvCtsPKDEEkylRklv +d+q+k+taed ++++++++e+E++KEvCRDLvCtsPKDEE++lR+l+ hh12762 249 KDDQVKGTAED---LVDTFFEVEVEMEKEVCRDLVCTSPKDEEGFLRDLC 295 elLLkfLlPedelesklvGrvllrEvLAtvvilplIsklSdPdfinlvii e+LL++LlP++++++k++ r+++rE+LA++++lplI++lSdPd+in+++i hh12762 296 EVLLYLLLPPGDFQNKIM-RYFVREILARGILLPLINQLSDPDYINQYVI 344 llfskse<-* +++++s+ hh12762 345 WMIRDSN 351 PF00615.9.ls: domain 1 of 1, from 440 to 580: score 24.2, E = 2.1e-06 *->sfeklldkqpiGrllFreFLktefsepkenieFwlaveEyektespa ++++l + + + F ++ + + + ++ Fw ve y++t + hh12762 440 PLDSIL-VDNVALQFFMDYMQQTGGQ--AHLFFWMTVEGYRVTAQQ- 482 ekrpdkaredev...........lAaAyGIydeFispeapkfevnldsev + +r+++ +++++++++ AaA GIy+ ++s++a v +d+++ hh12762 483 QLEVLLSRQRDGkhqtnqtkgllRAAAVGIYEQYLSEKASP-RVTVDDYL 531 vestqqnlkeavevddllkdlqptkdlFeeaqreiytlmrgD..sfprFL v++ +++l + pt+++F++ qr++y+lm +D++ +p F hh12762 532 VAKLADTLNHE----------DPTPEIFDDIQRKVYELMLRDerFYPSFR 571 eSdyflrfL<-* + r L hh12762 572 QNALYVRML 580 PF00615.9.fs: domain 1 of 1, from 507 to 563: score 34.1, E = 1e-08 *->AaAyGIydeFispeapkfevnldsevvestqqnlkeavevddllkdl AaA GIy+ ++s++a v +d+++v++ +++l + hh12762 507 AAAVGIYEQYLSEKASP-RVTVDDYLVAKLADTLNHE---------- 542 qptkdlFeeaqreiytlmrgD<-* pt+++F++ qr++y+lm +D hh12762 543 DPTPEIFDDIQRKVYELMLRD 563 PF00787.14.fs: domain 1 of 1, from 630 to 743: score 105.4, E = 1.2e-31 *->dpilivvvvdpetsrkkegdkkhtyyvyevttktn...kewsVkRRY +i+ v++++ +k ++ y+++v++++ +++++w+++RRY hh12762 630 AYISDTGVCNDH-------GKTYALYAITVHRRNLnseEMWKTYRRY 669 sdFeeLhekLlrkfp.grilPplPpKklfgryrkeslpmtsvwhssnnfd sdF+++h++++++f +++ + +lP+Kk+f nn+d hh12762 670 SDFHDFHMRITEQFEsLSSILKLPGKKTF-----------------NNMD 702 eefiekRrkgLeeyLqrllqhPelsn....esevvleFLesd<-* ++f+ekR+k+L++yLq ll Pe+++ ++ + v++FLe hh12762 703 RDFLEKRKKDLNAYLQ-LLLAPEMMKaspaLAHYVYDFLENK 743 PF00787.14.ls: domain 1 of 1, from 630 to 743: score 107.2, E = 4.5e-29 *->dpilivvvvdpetsrkkegdkkhtyyvyevttktn...kewsVkRRY +i+ v++++ +k ++ y+++v++++ +++++w+++RRY hh12762 630 AYISDTGVCNDH-------GKTYALYAITVHRRNLnseEMWKTYRRY 669 sdFeeLhekLlrkfp.grilPplPpKklfgryrkeslpmtsvwhssnnfd sdF+++h++++++f +++ + +lP+Kk+f nn+d hh12762 670 SDFHDFHMRITEQFEsLSSILKLPGKKTF-----------------NNMD 702 eefiekRrkgLeeyLqrllqhPelsn....esevvleFLesd<-* ++f+ekR+k+L++yLq ll Pe+++ ++ + v++FLe hh12762 703 RDFLEKRKKDLNAYLQ-LLLAPEMMKaspaLAHYVYDFLENK 743 PF08628.2.fs: domain 1 of 1, from 859 to 970: score 165.2, E = 1.6e-46 *->WLRGRalivvlqsllkqtlGPSLsTIekkirdsvedrltseerlvsy WLR R++ ++lq+l++ t+G +TI++ki+d+v+ + ts+e++++ hh12762 859 WLR-RNIKNLLQQLIRATYG---DTINRKIVDHVD-WMTSPEQVADS 900 lsllrdslWcedlfPgGeeLasppppqeRseeekertrkaAkivqlLilr ++ +rd++W P+G La++ p R+++ ++rtr a k ++L l hh12762 901 VKRFRDAFW-----PNG-ILAEAVP--CRDKSIRMRTRVAGK--TKL-LA 939 llPdalgkvvGrenareairriFdmLQnprL<-* +Pd+l++++G+e++r++i+r+F+m+Q+ +L hh12762 940 IMPDELKHIIGAETTRKGILRVFEMFQHNQL 970 PF08628.2.ls: domain 1 of 1, from 859 to 970: score 167.0, E = 4.4e-47 *->WLRGRalivvlqsllkqtlGPSLsTIekkirdsvedrltseerlvsy WLR R++ ++lq+l++ t+G +TI++ki+d+v+ + ts+e++++ hh12762 859 WLR-RNIKNLLQQLIRATYG---DTINRKIVDHVD-WMTSPEQVADS 900 lsllrdslWcedlfPgGeeLasppppqeRseeekertrkaAkivqlLilr ++ +rd++W P+G La++ p R+++ ++rtr a k ++L l hh12762 901 VKRFRDAFW-----PNG-ILAEAVP--CRDKSIRMRTRVAGK--TKL-LA 939 llPdalgkvvGrenareairriFdmLQnprL<-* +Pd+l++++G+e++r++i+r+F+m+Q+ +L hh12762 940 IMPDELKHIIGAETTRKGILRVFEMFQHNQL 970 //