hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-11240272/chunk_1/iprscan-20080812-11240272.nocrc
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Query sequence: hh12762
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00313                                                 363.2   1.6e-104   1
SM00315                                                 121.7    7.8e-32   1
SM00312                                                 117.4    1.6e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00313    1/1     164   351 ..     1   226 []   363.2 1.6e-104
SM00315    1/1     440   580 ..     1   121 []   121.7  7.8e-32
SM00312    1/1     630   743 ..     1   142 []   117.4  1.6e-30

Alignments of top-scoring domains:
SM00313: domain 1 of 1, from 164 to 351: score 363.2, E = 1.6e-104
                   *->paqLeeeLesiIskIirdYVqsWYkkisvSeDasFlkeirqtlkyil
                      +++++e+L+++I++++rdYVq+WY+  ++S+D+sFl+eirqtl+++l
     hh12762   164    ANIIDEPLQQVIQFSLRDYVQYWYY--TLSDDESFLLEIRQTLQNAL 208  

                   aelkrrlsrqDsaelissklleIlkklistiedalEavlrkaspqepite
                   +++++r++++D+++++   +++I+++++++++     v+rka  q++ite
     hh12762   209 IQFATRSKEIDWQPYF---TTRIVDDFGTHLR-----VFRKA--QQKITE 248  

                   idlqiaetaedNYKihkaLsekenEltKEvCRDLvCtsPKDEEkyvRqlv
                   +d+q+++taed   ++++++e+e+E++KEvCRDLvCtsPKDEE+++R+l+
     hh12762   249 KDDQVKGTAED---LVDTFFEVEVEMEKEVCRDLVCTSPKDEEGFLRDLC 295  

                   elLLklLlPedelesrlhDDDsPLRLFGRGKnERPWPsKsvrvllrEvLa
                   e+LL+lLlP+++++++++                       r+++rE+La
     hh12762   296 EVLLYLLLPPGDFQNKIM-----------------------RYFVREILA 322  

                   tavilplIsklSdPDtiNlviIllfsesr<-*
                   ++++lplI++lSdPD+iN+++I+++++s+   
     hh12762   323 RGILLPLINQLSDPDYINQYVIWMIRDSN    351  

SM00315: domain 1 of 1, from 440 to 580: score 121.7, E = 7.8e-32
                   *->sleklLendpiGrllFreFLksefseykenleFWlaveefkkaed..
                       l+++L  d ++++ F++++++++++   +l FW+ ve+++++++++
     hh12762   440    PLDSIL-VDNVALQFFMDYMQQTGGQ--AHLFFWMTVEGYRVTAQqq 483  

                   ...................eersskAreIydkylspeapkesevnldsdt
                    +   ++++++++++++++  ++++A  Iy++yls++a+   +v +d+++
     hh12762   484 levllsrqrdgkhqtnqtkGLLRAAAVGIYEQYLSEKASP--RVTVDDYL 531  

                   reeieenlee..pppdlFdeAqrevyell..ekdsyprFLkSdyYlrfL<
                   +++++++l++++p+p++Fd++qr vyel+ + + +yp F++  +Y r+L 
     hh12762   532 VAKLADTLNHedPTPEIFDDIQRKVYELMlrDERFYPSFRQNALYVRML  580  

                   -*
                     
     hh12762     -    -    

SM00312: domain 1 of 1, from 630 to 743: score 117.4, E = 1.6e-30
                   *->dniaivavveeetsgkkrgdgkhyyyvieietstnedveewtvyRRY
                       +i+ + v +++       ++ +++y+i +++++ +++e+w++yRRY
     hh12762   630    AYISDTGVCNDH-------GKTYALYAITVHRRNLNSEEMWKTYRRY 669  

                   sdFleLhskLlkkfpqekrrriiPplPekkllgryreraekesmkvkksl
                   sdF+++h+++ ++f     ++ i +lP+kk+                  +
     hh12762   670 SDFHDFHMRITEQFES---LSSILKLPGKKT------------------F 698  

                   nnfseefiekRrrgLerYLqkllnhPelinhyrvsevvleFLess<-*
                   nn++++f+ekR+++L++YLq ll  +++ + +++ + v++FLe++   
     hh12762   699 NNMDRDFLEKRKKDLNAYLQLLLAPEMMKASPALAHYVYDFLENK    743  

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