hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-11301914/chunk_1/iprscan-20080812-11301914.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hh12768
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02366.9.ls Dolichyl-phosphate-mannose-protein mannosylt   383.6   2.8e-112   1
PF02366.9.fs Dolichyl-phosphate-mannose-protein mannosylt   381.7     1e-111   1
PF02815.9.fs MIR domain                                     121.1    4.7e-36   1
PF02815.9.ls MIR domain                                     122.9    8.2e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02366.9.fs   1/1      69   313 ..     1   268 []   381.7   1e-111
PF02366.9.ls   1/1      69   313 ..     1   268 []   383.6 2.8e-112
PF02815.9.fs   1/1     360   534 ..     1   208 []   121.1  4.7e-36
PF02815.9.ls   1/1     360   534 ..     1   208 []   122.9  8.2e-34

Alignments of top-scoring domains:
PF02366.9.fs: domain 1 of 1, from 69 to 313: score 381.7, E = 1e-111
                   *->kiltllaflirfyllalpnlvvfdevhfgkfasyYaealffmdvhgl
                      +++tll+f++rf++l+ p+++++de+hfgk++syY++++ff+dvh  
     hh12768    69    ALVTLLSFATRFHRLDEPPHICWDETHFGKMGSYYINRTFFFDVH-- 113  

                   pplgkmlialggyWmlagkpglflfisigsfyyfgnvpyfsmRlfsAllg
                   pplgkmli+l+gy  l+g++g+flf++ g   ++++++y++mR f+A+lg
     hh12768   114 PPLGKMLIGLAGY--LSGYDGTFLFQKPG--DKYEHHSYMGMRGFCAFLG 159  

                   sLtvpLvYltllklgfsrlaAllaallvalenslvtlSRyiLlDspLlFF
                   s++vp++Ylt+l l +s+ aAll+a+l++++++++tlS+yiLlD++L+FF
     hh12768   160 SWLVPFAYLTVLDLSKSLSAALLTAALLTFDTGCLTLSQYILLDPILMFF 209  

                   ttlamycllkfetlrlAlkaPfsrkwwlwllltGiaLGlAvstKgvglFt
                   +++am++++k++ ++   ++Pfs++ww+wl ltG++L+ A+++K+vglF+
     hh12768   210 IMAAMLSMVKYNSCA---DRPFSAPWWFWLSLTGVSLAGALGVKFVGLFI 256  

                   vlpvgllfiwllWqllgqlAwdkslllkripQlwmwyvtivkhlfarlla
                   +l vgl +i +lW+l+g    d+sl+l+          t++khl ar+l+
     hh12768   257 ILQVGLNTIADLWYLFG----DLSLSLV----------TVGKHLTARVLC 292  

                   LiliPwalylaqfyvhfwllf<-*
                   Li++P+aly a+f+vhf++l+   
     hh12768   293 LIVLPLALYTATFAVHFMVLS    313  

PF02366.9.ls: domain 1 of 1, from 69 to 313: score 383.6, E = 2.8e-112
                   *->kiltllaflirfyllalpnlvvfdevhfgkfasyYaealffmdvhgl
                      +++tll+f++rf++l+ p+++++de+hfgk++syY++++ff+dvh  
     hh12768    69    ALVTLLSFATRFHRLDEPPHICWDETHFGKMGSYYINRTFFFDVH-- 113  

                   pplgkmlialggyWmlagkpglflfisigsfyyfgnvpyfsmRlfsAllg
                   pplgkmli+l+gy  l+g++g+flf++ g   ++++++y++mR f+A+lg
     hh12768   114 PPLGKMLIGLAGY--LSGYDGTFLFQKPG--DKYEHHSYMGMRGFCAFLG 159  

                   sLtvpLvYltllklgfsrlaAllaallvalenslvtlSRyiLlDspLlFF
                   s++vp++Ylt+l l +s+ aAll+a+l++++++++tlS+yiLlD++L+FF
     hh12768   160 SWLVPFAYLTVLDLSKSLSAALLTAALLTFDTGCLTLSQYILLDPILMFF 209  

                   ttlamycllkfetlrlAlkaPfsrkwwlwllltGiaLGlAvstKgvglFt
                   +++am++++k++ ++   ++Pfs++ww+wl ltG++L+ A+++K+vglF+
     hh12768   210 IMAAMLSMVKYNSCA---DRPFSAPWWFWLSLTGVSLAGALGVKFVGLFI 256  

                   vlpvgllfiwllWqllgqlAwdkslllkripQlwmwyvtivkhlfarlla
                   +l vgl +i +lW+l+g    d+sl+l+          t++khl ar+l+
     hh12768   257 ILQVGLNTIADLWYLFG----DLSLSLV----------TVGKHLTARVLC 292  

                   LiliPwalylaqfyvhfwllf<-*
                   Li++P+aly a+f+vhf++l+   
     hh12768   293 LIVLPLALYTATFAVHFMVLS    313  

PF02815.9.fs: domain 1 of 1, from 360 to 534: score 121.1, E = 4.7e-36
                   *->GyLhsgdvlrl..fhseQqqiLtyphldqnndldvvflRttsyesga
                      GyLhs+ +l++++ ++ Qqq++ty h+d nn                
     hh12768   360    GYLHSHRHLYPegIGARQQQVTTYLHKDYNNL--------------- 391  

                   vatssrsLWriE..vvqrdkwrggagkwellkdGsvfRlrHltTGrYLhs
                           W+i +++ ++d+   +    e++++G+++Rl H  T r+Lhs
     hh12768   392 --------WIIKkhNTNSDPLDPSF-PVEFVRHGDIIRLEHKETSRNLHS 432  

                   hdekdppvsekedwqkevsaYglrgfpgdatnDdkwrveifekksttgmg
                   h +  +p++ k   +  v+ Yg  g  gd  nD  wr+e+++ k+     
     hh12768   433 HYHE-APMTRK---HYQVTGYGINGT-GDS-NDF-WRIEVVNRKFG---- 471  

                   qerikpgdskvrLrHvcTgcwLfshsvklkkprwGfeqeektc...akkg
                    +rik ++s  r++H++Tgc+L s+   l  p+wG eq e+tc++ +k+ 
     hh12768   472 -NRIKVLRSRIRFIHLVTGCVLGSSGKVL--PKWGWEQLEVTCtpyLKE- 517  

                   kdegtmwyiEdkenfaLp<-*
                      ++ w++Ed+ n+ Lp   
     hh12768   518 -TLNSIWNVEDHINPKLP    534  

PF02815.9.ls: domain 1 of 1, from 360 to 534: score 122.9, E = 8.2e-34
                   *->GyLhsgdvlrl..fhseQqqiLtyphldqnndldvvflRttsyesga
                      GyLhs+ +l++++ ++ Qqq++ty h+d nn                
     hh12768   360    GYLHSHRHLYPegIGARQQQVTTYLHKDYNNL--------------- 391  

                   vatssrsLWriE..vvqrdkwrggagkwellkdGsvfRlrHltTGrYLhs
                           W+i +++ ++d+   +    e++++G+++Rl H  T r+Lhs
     hh12768   392 --------WIIKkhNTNSDPLDPSF-PVEFVRHGDIIRLEHKETSRNLHS 432  

                   hdekdppvsekedwqkevsaYglrgfpgdatnDdkwrveifekksttgmg
                   h +  +p++ k   +  v+ Yg  g  gd  nD  wr+e+++ k+     
     hh12768   433 HYHE-APMTRK---HYQVTGYGINGT-GDS-NDF-WRIEVVNRKFG---- 471  

                   qerikpgdskvrLrHvcTgcwLfshsvklkkprwGfeqeektc...akkg
                    +rik ++s  r++H++Tgc+L s+   l  p+wG eq e+tc++ +k+ 
     hh12768   472 -NRIKVLRSRIRFIHLVTGCVLGSSGKVL--PKWGWEQLEVTCtpyLKE- 517  

                   kdegtmwyiEdkenfaLp<-*
                      ++ w++Ed+ n+ Lp   
     hh12768   518 -TLNSIWNVEDHINPKLP    534  

//