hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-11301914/chunk_1/iprscan-20080812-11301914.nocrc
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Query sequence: hh12768
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00472                                                 142.2    5.4e-38   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00472    1/3     341   397 ..     1    79 []    46.7    3e-09
SM00472    2/3     410   466 ..     1    79 []    56.8  2.7e-12
SM00472    3/3     471   528 ..     1    79 []    38.7  8.1e-07

Alignments of top-scoring domains:
SM00472: domain 1 of 3, from 341 to 397: score 46.7, E = 3e-09
                   *->gevvrwGsvvRLrHvaTg.ryLhshdvkLlldssyprdsplppwgsg
                      +e++++Gsv++ +++ +  +yLhsh +            ++  +g  
     hh12768   341    PEHLAYGSVITVKNLRMAiGYLHSHRHL-----------YPEGIGAR 376  

                   qqeVtgygepgikgdslvfvqhdannlWlvepv<-*
                   qq+Vt y ++            d nnlW++ ++   
     hh12768   377 QQQVTTYLHK------------DYNNLWIIKKH    397  

SM00472: domain 2 of 3, from 410 to 466: score 56.8, E = 2.7e-12
                   *->gevvrwGsvvRLrHvaTgryLhshdvkLlldssyprdsplppwgsgq
                       e+vr+G+++RL H+ T r+Lhsh +              +p+  ++
     hh12768   410    VEFVRHGDIIRLEHKETSRNLHSHYHE-------------APMTRKH 443  

                   qeVtgygepgikgdslvfvqhdannlWlvepv<-*
                    +Vtgyg  g          +d+n+ W++e v   
     hh12768   444 YQVTGYGINGT---------GDSNDFWRIEVV    466  

SM00472: domain 3 of 3, from 471 to 528: score 38.7, E = 8.1e-07
                   *->gevvrwG.svvRLrHvaTgryLhshdvkLlldssyprdsplppwgsg
                      g  +++ +s +R+ H+ Tg+ L s++              lp wg +
     hh12768   471    GNRIKVLrSRIRFIHLVTGCVLGSSGKV------------LPKWGWE 505  

                   qqeVtgygepgikgdslvfvqhdannlWlvepv<-*
                   q eVt++++  +            n++W+ve +   
     hh12768   506 QLEVTCTPYLKE----------TLNSIWNVEDH    528  

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