hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-11363648/chunk_1/iprscan-20080812-11363648.nocrc
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Query sequence: hh12796
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01302.15.fs CAP-Gly domain                                  52.5    6.2e-14   1
PF00170.11.fs bZIP transcription factor                       32.2    1.8e-08   5
PF02370.7.ls M protein repeat                                21.8     0.0022   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01302.15.fs   1/1       1    30 [.    43    74 .]    52.5  6.2e-14

Alignments of top-scoring domains:
PF01302.15.fs: domain 1 of 1, from 1 to 30: score 52.5, E = 6.2e-14
                   *->lrGKNDGsvkGvrYFqCegpkyGiFvrpskve<-*
                      l GKNDG v G+rYFqC+ pkyG+F++  kv+   
     hh12796     1    L-GKNDGAVAGTRYFQCQ-PKYGLFAPVHKVT    30   

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