hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-11424886/chunk_1/iprscan-20080812-11424886.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh13050 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 710.1 1.5e-210 2 PF00069.15.fs Protein kinase domain 706.3 2e-209 2 PF07714.7.fs Protein tyrosine kinase 185.1 1.3e-53 2 PF07714.7.ls Protein tyrosine kinase 156.9 5e-44 2 PF00433.14.fs Protein kinase C terminal domain 50.8 1.4e-14 1 PF00433.14.ls Protein kinase C terminal domain 52.8 1.1e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.ls 1/2 132 391 .. 1 287 [] 340.6 2.5e-99 PF00069.15.fs 1/2 132 391 .. 1 287 [] 338.7 9.2e-99 PF07714.7.ls 1/2 132 385 .. 1 272 [] 91.6 2.2e-24 PF07714.7.fs 1/2 132 353 .. 1 239 [. 98.7 1.5e-28 PF00433.14.fs 1/1 411 455 .. 1 47 [] 50.8 1.4e-14 PF00433.14.ls 1/1 411 455 .. 1 47 [] 52.8 1.1e-12 PF07714.7.fs 2/2 488 702 .. 1 234 [. 86.3 5.9e-25 PF00069.15.ls 2/2 488 745 .. 1 287 [] 369.5 4.8e-108 PF00069.15.fs 2/2 488 745 .. 1 287 [] 367.6 1.8e-107 PF07714.7.ls 2/2 488 751 .. 1 272 [] 65.3 1.6e-16 Alignments of top-scoring domains: PF00069.15.ls: domain 1 of 2, from 132 to 391: score 340.6, E = 2.5e-99 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt +ell++lG+Gs+G+V++ ++++ ++ ++++A+K++kk + k + + hh13050 132 FELLKVLGQGSYGKVFLVRKVKGSDagqLYAMKVLKKATLKVRDRVR 178 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy E il++++Hp+Iv+l+++f+++++lyl+l++++gG dLf++ hh13050 179 SKM--ERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGG----DLFTR 222 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn ls ++ + +e+++k+++ +++ +l++LHs gii+RDLKPeNILld+ hh13050 223 LS---KEVMF--TEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDE 267 ngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygt +g++ Ki+DFGl+k + ++++ ++++f+GT++YmAPEv++ ++g+++ hh13050 268 EGHI----KITDFGLSKEA-IdHDKrAYSFCGTIEYMAPEVVN-RRGHTQ 311 kvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspew ++D+WS+Gv+++e+ltG +PF+g+ d ++ +++il+++l + + + hh13050 312 SADWWSFGVLMFEMLTGSLPFQGK-----DRKETMALILKAKLGMPQFLS 356 dsisrsefrrlpnlseeakdLikkcLnkDPskRlt.....aeeilqHPwf ea++L++ +++++P Rl+ + ++ eei+ HP+f hh13050 357 ---------------GEAQSLLRALFKRNPCNRLGagidgVEEIKRHPFF 391 <-* hh13050 - - PF00069.15.fs: domain 1 of 2, from 132 to 391: score 338.7, E = 9.2e-99 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt +ell++lG+Gs+G+V++ ++++ ++ ++++A+K++kk + k + + hh13050 132 FELLKVLGQGSYGKVFLVRKVKGSDagqLYAMKVLKKATLKVRDRVR 178 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy E il++++Hp+Iv+l+++f+++++lyl+l++++gG dLf++ hh13050 179 SKM--ERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGG----DLFTR 222 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn ls ++ + +e+++k+++ +++ +l++LHs gii+RDLKPeNILld+ hh13050 223 LS---KEVMF--TEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDE 267 ngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygt +g++ Ki+DFGl+k + ++++ ++++f+GT++YmAPEv++ ++g+++ hh13050 268 EGHI----KITDFGLSKEA-IdHDKrAYSFCGTIEYMAPEVVN-RRGHTQ 311 kvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspew ++D+WS+Gv+++e+ltG +PF+g+ d ++ +++il+++l + + + hh13050 312 SADWWSFGVLMFEMLTGSLPFQGK-----DRKETMALILKAKLGMPQFLS 356 dsisrsefrrlpnlseeakdLikkcLnkDPskRlt.....aeeilqHPwf ea++L++ +++++P Rl+ + ++ eei+ HP+f hh13050 357 ---------------GEAQSLLRALFKRNPCNRLGagidgVEEIKRHPFF 391 <-* hh13050 - - PF07714.7.ls: domain 1 of 2, from 132 to 385: score 91.6, E = 2.2e-24 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie ++l+k+LG+G++G+V++ + +g++ ++ A K+Lk+ a+ + hh13050 132 FELLKVLGQGSYGKVFLVRKV-KGSDAGQLYAMKVLKK--ATLKV-- 173 redFlr..EAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegG r+ ++ E i+ + +Hp iV+L+ + ++ ly+++ + gG hh13050 174 RDRVRSkmERDILAEV-NHPFIVKLHYAFQT-EGK----LYLILDFLRGG 217 dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcL dL + L k + +t +d + ++ A ++++L+s +++ RDL N+L hh13050 218 DLFTRLSK---EVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENIL 264 VsenlvVKIsDFGLaRdiynddyY.vrkkgggklPvkWmAPEslkygkFt ++e++++KI+DFGL++ + d + g + mAPE+ + + t hh13050 265 LDEEGHIKITDFGLSKEAIDHDKRaYSFCG----TIEYMAPEVVNRRGHT 310 skSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCP D WSFGVl++E++t G P ++g + e+++l+ ++ +p+ + hh13050 311 QSADWWSFGVLMFEMLT-GSLP-FQGKDRKETMALILKAKLGMPQFL--S 356 delYdlMlqCWaedPedRPtFsel..veeL<-* e +l++ +++P +R + +++vee+ hh13050 357 GEAQSLLRALFKRNPCNRLG-AGIdgVEEI 385 PF07714.7.fs: domain 1 of 2, from 132 to 353: score 98.7, E = 1.5e-28 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie ++l+k+LG+G++G+V++ + +g++ ++ A K+Lk+ a+ + hh13050 132 FELLKVLGQGSYGKVFLVRKV-KGSDAGQLYAMKVLKK--ATLKV-- 173 redFlr..EAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegG r+ ++ E i+ + +Hp iV+L+ + ++ ly+++ + gG hh13050 174 RDRVRSkmERDILAEV-NHPFIVKLHYAFQT-EGK----LYLILDFLRGG 217 dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcL dL + L k + +t +d + ++ A ++++L+s +++ RDL N+L hh13050 218 DLFTRLSK---EVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENIL 264 VsenlvVKIsDFGLaRdiynddyY.vrkkgggklPvkWmAPEslkygkFt ++e++++KI+DFGL++ + d + g + mAPE+ + + t hh13050 265 LDEEGHIKITDFGLSKEAIDHDKRaYSFCG----TIEYMAPEVVNRRGHT 310 skSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLpr<-* D WSFGVl++E++t G P ++g + e+++l+ ++ +p+ hh13050 311 QSADWWSFGVLMFEMLT-GSLP-FQGKDRKETMALILKAKLGMPQ 353 PF00433.14.fs: domain 1 of 1, from 411 to 455: score 50.8, E = 1.4e-14 *->kvksptDTsNFDpeFTsepptltpppdsr.lssgkqleFrGFtYvnp v p+DT +FDpeFT +pt++p + s++ +++FrGF++v++ hh13050 411 AVGRPEDTFHFDPEFTARTPTDSP---GVpPSANAHHLFRGFSFVAS 454 e<-* + hh13050 455 S 455 PF00433.14.ls: domain 1 of 1, from 411 to 455: score 52.8, E = 1.1e-12 *->kvksptDTsNFDpeFTsepptltpppdsr.lssgkqleFrGFtYvnp v p+DT +FDpeFT +pt++p + s++ +++FrGF++v++ hh13050 411 AVGRPEDTFHFDPEFTARTPTDSP---GVpPSANAHHLFRGFSFVAS 454 e<-* + hh13050 455 S 455 PF07714.7.fs: domain 2 of 2, from 488 to 702: score 86.3, E = 5.9e-25 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei ++ + +G G++ + +++ k t+++ AVK+++k + +++e hh13050 488 YEIKEDIGVGSYSVCKRCVHK----ATDTEYAVKIIdKS-KRDPSE- 528 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd E++i+ ++G+HpNi+ L v + g+ +y+V+E+m gG hh13050 529 -------EIEILLRYGQHPNIITLKDVYDD-GKF----VYLVMELMRGGE 566 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV Lld + +r ++ + + i k M+YL+s++ vHRDL N+L hh13050 567 LLDRILR---QRYFSEREASDVLCTITKTMDYLHSQGVVHRDLKPSNILY 613 se....nlvVKIsDFGLaRdiynddyYvrkkgggklPvkWm....APEsl ++++++ ++++DFG a+++ r++ g + + + APE+l hh13050 614 RDesgsPESIRVCDFGFAKQL-------RAGNGLLMTPCYTanfvAPEVL 656 kygkFtskSDVWSFGVlLWEiftlGeqPFY...pgmsneevlellyedG< k + + D+WS G+lL+ ++ G +P + ++p+ ++ee+l+++ +G hh13050 657 KRQGYDAACDIWSLGILLYTMLA-GFTP-FangPDDTPEEILARI-GSG 702 -* hh13050 - - PF00069.15.ls: domain 2 of 2, from 488 to 745: score 369.5, E = 4.8e-108 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr ye++e +G Gs++++++++hk t ++AvKii+k+k+++++ hh13050 488 YEIKEDIGVGSYSVCKRCVHKATDTEYAVKIIDKSKRDPSE------ 528 lsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls Ei+il+r ++HpNI++l+dv+ d++ +ylV+E+++gG +L d++ hh13050 529 --EIEILLRYgQHPNIITLKDVYDDGKFVYLVMELMRGG----ELLDRIL 572 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng r++ + se+ea +++ i + ++YLHs+g++HRDLKP+NIL+ ++ hh13050 573 ---RQRYF--SEREASDVLCTITKTMDYLHSQGVVHRDLKPSNILYRDES 617 vvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkv +++++++DFG+Ak+l ++ l+t++ T +++APEvl+ ++gy+ ++ hh13050 618 GSPESIRVCDFGFAKQL-RaGNGlLMTPCYTANFVAPEVLK-RQGYDAAC 665 DvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewd D+WSlG++ly +l G +PF + +++++ +++++i+++++ + +wd hh13050 666 DIWSLGILLYTMLAGFTPFANG---PdDTPEEILARIGSGKYALSGGNWD 712 sisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* sis ++akd+++k+L++DP++Rlta+++l+HPw+ hh13050 713 SIS-----------DAAKDVVSKMLHVDPHQRLTAMQVLKHPWV 745 PF00069.15.fs: domain 2 of 2, from 488 to 745: score 367.6, E = 1.8e-107 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr ye++e +G Gs++++++++hk t ++AvKii+k+k+++++ hh13050 488 YEIKEDIGVGSYSVCKRCVHKATDTEYAVKIIDKSKRDPSE------ 528 lsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls Ei+il+r ++HpNI++l+dv+ d++ +ylV+E+++gG +L d++ hh13050 529 --EIEILLRYgQHPNIITLKDVYDDGKFVYLVMELMRGG----ELLDRIL 572 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng r++ + se+ea +++ i + ++YLHs+g++HRDLKP+NIL+ ++ hh13050 573 ---RQRYF--SEREASDVLCTITKTMDYLHSQGVVHRDLKPSNILYRDES 617 vvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkv +++++++DFG+Ak+l ++ l+t++ T +++APEvl+ ++gy+ ++ hh13050 618 GSPESIRVCDFGFAKQL-RaGNGlLMTPCYTANFVAPEVLK-RQGYDAAC 665 DvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewd D+WSlG++ly +l G +PF + +++++ +++++i+++++ + +wd hh13050 666 DIWSLGILLYTMLAGFTPFANG---PdDTPEEILARIGSGKYALSGGNWD 712 sisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* sis ++akd+++k+L++DP++Rlta+++l+HPw+ hh13050 713 SIS-----------DAAKDVVSKMLHVDPHQRLTAMQVLKHPWV 745 PF07714.7.ls: domain 2 of 2, from 488 to 751: score 65.3, E = 1.6e-16 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei ++ + +G G++ + +++ k t+++ AVK+++k + +++e hh13050 488 YEIKEDIGVGSYSVCKRCVHK----ATDTEYAVKIIdKS-KRDPSE- 528 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd E++i+ ++G+HpNi+ L v + g+ +y+V+E+m gG hh13050 529 -------EIEILLRYGQHPNIITLKDVYDD-GKF----VYLVMELMRGGE 566 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV Lld + +r ++ + + i k M+YL+s++ vHRDL N+L hh13050 567 LLDRILR---QRYFSEREASDVLCTITKTMDYLHSQGVVHRDLKPSNILY 613 se....nlvVKIsDFGLaRdiynddyYvrkkgggklPvkWm....APEsl ++++++ ++++DFG a+++ r++ g + + + APE+l hh13050 614 RDesgsPESIRVCDFGFAKQL-------RAGNGLLMTPCYTanfvAPEVL 656 kygkFtskSDVWSFGVlLWEiftlGeqPFY...pgmsneevlellyedGy k + + D+WS G+lL+ ++ G +P + ++p+ ++ee+l++++ y hh13050 657 KRQGYDAACDIWSLGILLYTMLA-GFTP-FangPDDTPEEILARIGSGKY 704 RLpr..PenCPdelYdlMlqCWaedPedRPtFsel........veeL<-* L ++ + +d d+ + + dP +R t ++ +++ ++e L hh13050 705 ALSGgnWDSISDAAKDVVSKMLHVDPHQRLTAMQVlkhpwvvnREYL 751 //