hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-11424886/chunk_1/iprscan-20080812-11424886.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh13050 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 719.4 9.7e-212 2 SM00219 98.0 1.1e-24 2 SM00133 81.4 1.1e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/2 132 385 .. 1 280 [] 68.2 1e-15 SM00220 1/2 132 391 .. 1 231 [] 366.6 1.6e-105 SM00133 1/1 392 453 .. 1 79 [] 81.4 1.1e-19 SM00219 2/2 488 751 .. 1 280 [] 29.7 5.6e-13 SM00220 2/2 488 745 .. 1 231 [] 352.8 2.1e-101 Alignments of top-scoring domains: SM00219: domain 1 of 2, from 132 to 385: score 68.2, E = 1e-15 *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda.....kee +l+k+LG G +G+V++ + ++++ ++ A K+Lk+ + + +++ hh13050 132 FELLKVLGQGSYGKVFLVRKVkgsdagQLYAMKVLKKATlkvrdRVR 178 FlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdL E i+ ++ +Hp iVkL+ + +e + l++++ + gGdL hh13050 179 SKMERDILAEV--NHPFIVKLHYAFQTE-------GKLYLILDFLRGGDL 219 ldyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgen +L k ++ +d + A ++L+s +++ RDL N+L++e+ hh13050 220 FTRLSKEVM-FTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEE 268 kvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslk +++KI+DFGLs++ d+D k Y+ +g i mAPE+ + hh13050 269 GHIKITDFGLSKEAIDHD-----KRAYSF----CGT----IEYMAPEVVN 305 dgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyR + t D WSFGVl++E++t G P g ++ +e ++++ k + hh13050 306 RRGHTQSADWWSFGVLMFEMLT-GSLPFQG-----KDRKETMALILKAKL 349 lpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel.verl<-* ++ + e +l + +++P +R +ve++ hh13050 350 GMPQFL---------SGEAQSLLRALFKRNPCNRLGAGIDgVEEI 385 SM00220: domain 1 of 2, from 132 to 391: score 366.6, E = 1.6e-105 *->YellkklGkGaFGkVylardkk...tgrlvAiKvik.........er +ellk+lG+G++GkV+l+r++k+++ g+l+A+Kv+k+ + + +++ r hh13050 132 FELLKVLGQGSYGKVFLVRKVKgsdAGQLYAMKVLKkatlkvrdrVR 178 ilrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkr + E++iL + +HP+IVkL+++f++++klyl+++++ G GdLf++l k hh13050 179 SKMERDILAEvNHPFIVKLHYAFQTeGKLYLILDFLRG--GDLFTRLSKE 226 grrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..h ++E++++fy++++++aL++LHs+gIi+RDLKPeNiLLd+++h hh13050 227 VM------FTEeDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEegH 270 vKlaDFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlG +K++DFGl+++ +++++ ++f+GT eYmAPEv++++g++ ++D+WS+G hh13050 271 IKITDFGLSKEAidhdkraYSFCGTIEYMAPEVVnrrGHTQ-SADWWSFG 319 cilyElltGkpPFp......qldlifkkig......SpeakdLikklLvk ++++E+ltG PF++++++++++li+k ++ + S ea +L++ l+++ hh13050 320 VLMFEMLTGSLPFQgkdrkeTMALILKAKLgmpqflSGEAQSLLRALFKR 369 dPekRlta.eaLedeldikaHPff<-* +P +Rl+a+ ++ik HPff hh13050 370 NPCNRLGAgIDGV--EEIKRHPFF 391 SM00133: domain 1 of 1, from 392 to 453: score 81.4, E = 1.1e-19 *->rgiDWdkLenekkeiePPFkPkikeVyAsptDtsNFDkeFteetpvl iDW++L++ kei+PPFkP + p+Dt FD+eFt tp++ hh13050 392 VTIDWNTLYR--KEIKPPFKPAVG----RPEDTFHFDPEFTARTPTD 432 tpvdsalsnsiqqeeaeteippdpFrGFsyvf<-* +p +++ n+++ FrGFs+v+ hh13050 433 SPGVPPSANAHHL-----------FRGFSFVA 453 SM00219: domain 2 of 2, from 488 to 751: score 29.7, E = 5.6e-13 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda..keeFlrEak + ++ +G G + + +++ k +++e AVK + +++++ e E++ hh13050 488 YEIKEDIGVGSYSVCKRCVHKatdTEYAVKIIDKSKrdPSE---EIE 531 iMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrk i+ ++G +HpNi+ L v ++ + +++vmE+m gG Lld++ + hh13050 532 ILLRYG-QHPNIITLKDVYDDG-------KFVYLVMELMRGGELLDRILR 573 nrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk....v r +s ++ + I k M+YL+s+++vHRDL N+L+ ++ ++++ hh13050 574 QRY-FSEREASDVLCTITKTMDYLHSQGVVHRDLKPSNILYRDESgspeS 622 vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdg ++++DFG ++ l + ++ ++ ++++ APE+lk hh13050 623 IRVCDFGFAKQLRAG-----NGLLMTPCY--TANFV------APEVLKRQ 659 kFtskSDVWSFGVlLWEiftlGeqPYpgeiqq.fmsneevleylkkGyRl + + D+WS G+lL+ ++ G +P + ++ ++ee+l+++ +G++ hh13050 660 GYDAACDIWSLGILLYTMLA-GFTPFAN---GpDDTPEEILARIGSGKYA 705 pkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel........ver n +d+ d+ ++ + dP++R t ++ +++ ++e+ hh13050 706 LSGGN-----WDSISDAAKDVVSKMLHVDPHQRLTAMQVlkhpwvvnREY 750 l<-* l hh13050 751 L 751 SM00220: domain 2 of 2, from 488 to 745: score 352.8, E = 2.1e-101 *->YellkklGkGaFGkVylardkktgrlvAiKvik...erilrEikiLk Ye+ + +G G++++++++++k t+ ++A+K+i++++++ Ei+iL hh13050 488 YEIKEDIGVGSYSVCKRCVHKATDTEYAVKIIDkskRDPSEEIEILL 534 k..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglrkv + ++HPNI++L+dv++d++++ylVmE++ G G+L+d++ ++++ hh13050 535 RygQHPNIITLKDVYDDgKFVYLVMELMRG--GELLDRILRQRY------ 576 lsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds......hvKla +sE+ea +++ i + ++YLHsqg++HRDLKP+NiL +++++++ + ++ hh13050 577 FSErEASDVLCTITKTMDYLHSQGVVHRDLKPSNILYRDesgspeSIRVC 626 DFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcily DFG+A+ql+ +++ +t + T +++APEvl+++gY+ a+DiWSlG++ly hh13050 627 DFGFAKQLragngllMTPCYTANFVAPEVLkrqGYDA-ACDIWSLGILLY 675 ElltGkpPFp.....qldlifkkig..............SpeakdLikkl +l+G +PF +++++++++i+ +ig++++ +++++++ S+ akd ++k+ hh13050 676 TMLAGFTPFAngpddTPEEILARIGsgkyalsggnwdsiSDAAKDVVSKM 725 LvkdPekRlta.eaLedeldikaHPff<-* L++dP +Rlta ++L+ HP++ hh13050 726 LHVDPHQRLTAmQVLK-------HPWV 745 //