# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohh13418.fasta.nr -Q hh13418.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hh13418, 393 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6827479 sequences Expectation_n fit: rho(ln(x))= 4.9460+/-0.000189; mu= 12.1480+/- 0.011 mean_var=73.6552+/-14.744, 0's: 31 Z-trim: 151 B-trim: 3734 in 2/63 Lambda= 0.149442 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087814|dbj|BAD92354.1| HLA class I histocompa ( 393) 2713 594.0 1.6e-167 gi|231347|sp|P30443|1A01_HUMAN HLA class I histoco ( 365) 2478 543.3 2.8e-152 gi|14970572|emb|CAC44381.1| MHC class I antigen [H ( 365) 2471 541.8 7.8e-152 gi|53850041|emb|CAH25490.1| MHC class I antigen [H ( 365) 2470 541.6 9.1e-152 gi|460242|gb|AAA80569.1| HLA-A-0102 allele ( 365) 2459 539.2 4.7e-151 gi|123261751|emb|CAI17777.2| major histocompatibil ( 371) 2456 538.6 7.5e-151 gi|231370|sp|P30455|1A36_HUMAN HLA class I histoco ( 365) 2453 537.9 1.2e-150 gi|88853307|emb|CAJ70622.1| MHC class I antigen [H ( 365) 2449 537.1 2.1e-150 gi|642082|gb|AAA61826.1| MHC class I alpha chain ( 365) 2414 529.5 3.9e-148 gi|122157|sp|P13746|1A11_HUMAN HLA class I histoco ( 365) 2413 529.3 4.6e-148 gi|17028223|gb|AAL34341.1|L47291_1 lymphocyte anti ( 365) 2412 529.1 5.3e-148 gi|487911|dbj|BAA04118.1| HLA-A11 antigen A11.2 [H ( 365) 2408 528.2 9.6e-148 gi|6708058|gb|AAF25781.1| HLA class I antigen [Hom ( 365) 2406 527.8 1.3e-147 gi|1245460|gb|AAB60406.1| MHC class I HLA-A ( 365) 2405 527.6 1.5e-147 gi|13785159|emb|CAC37336.1| MHC class I antigen [H ( 365) 2405 527.6 1.5e-147 gi|56790904|gb|AAW30165.1| MHC class I antigen [Ho ( 357) 2403 527.1 2e-147 gi|88853309|emb|CAJ70623.1| MHC class I antigen [H ( 365) 2403 527.1 2e-147 gi|4468255|emb|CAB38056.1| MHC class I antigen [Ho ( 365) 2397 525.8 5e-147 gi|55560965|gb|AAV53344.1| MHC class I antigen [Ho ( 371) 2391 524.6 1.2e-146 gi|108743883|gb|ABG02210.1| MHC class I antigen [P ( 365) 2388 523.9 1.9e-146 gi|122146|sp|P16209|1A01_PANTR CHLA class I histoc ( 365) 2385 523.3 3e-146 gi|8117795|gb|AAF72774.1|AF168393_1 MHC class I an ( 365) 2384 523.0 3.5e-146 gi|8117750|gb|AAF72754.1|AF165355_1 MHC class I an ( 365) 2381 522.4 5.4e-146 gi|6815812|gb|AAF28734.1|AF217561_1 MHC class I an ( 365) 2379 522.0 7.3e-146 gi|4468256|emb|CAB38057.1| MHC class I antigen [Ho ( 371) 2375 521.1 1.3e-145 gi|8117801|gb|AAF72777.1|AF168396_1 MHC class I an ( 357) 2374 520.9 1.5e-145 gi|34223717|sp|P04439|1A03_HUMAN HLA class I histo ( 365) 2374 520.9 1.5e-145 gi|189053688|dbj|BAG35940.1| unnamed protein produ ( 365) 2373 520.7 1.8e-145 gi|119732357|gb|ABL98210.1| MHC class I antigen [H ( 365) 2369 519.8 3.3e-145 gi|106897073|gb|ABF83198.1| MHC class I antigen [P ( 365) 2369 519.8 3.3e-145 gi|8117793|gb|AAF72773.1|AF168392_1 MHC class I an ( 364) 2364 518.7 6.9e-145 gi|108743887|gb|ABG02212.1| MHC class I antigen [P ( 365) 2364 518.7 6.9e-145 gi|231351|sp|P13748|1A03_PANTR CHLA class I histoc ( 365) 2364 518.7 6.9e-145 gi|162418080|gb|ABX89312.1| MHC class I antigen [H ( 365) 2363 518.5 8e-145 gi|109692853|gb|ABG38215.1| MHC class II antigen [ ( 365) 2358 517.4 1.7e-144 gi|506672|gb|AAA88855.1| MHC class I A ( 356) 2354 516.6 3e-144 gi|8571972|gb|AAF76944.1|AF179642_1 MHC class I an ( 365) 2353 516.4 3.6e-144 gi|123121537|emb|CAI18373.2| major histocompatibil ( 371) 2352 516.1 4.2e-144 gi|8117748|gb|AAF72753.1|AF165354_1 MHC class I an ( 365) 2348 515.3 7.5e-144 gi|21360888|gb|AAM49756.1| MHC class I antigen [Pa ( 365) 2348 515.3 7.5e-144 gi|8571960|gb|AAF76938.1|AF179636_1 MHC class I an ( 365) 2346 514.8 1e-143 gi|21360886|gb|AAM49755.1| MHC class I antigen [Pa ( 365) 2346 514.8 1e-143 gi|8571962|gb|AAF76939.1|AF179637_1 MHC class I an ( 363) 2343 514.2 1.6e-143 gi|506664|gb|AAA88851.1| MHC class I A ( 357) 2342 514.0 1.8e-143 gi|667013|emb|CAA84401.1| HLA-A locus alpha 2 doma ( 365) 2342 514.0 1.8e-143 gi|1280214|gb|AAA98118.1| MHC class I antigen [Hom ( 363) 2339 513.3 2.9e-143 gi|5107134|gb|AAD39980.1|AF148862_1 MHC class I an ( 365) 2330 511.4 1.1e-142 gi|122143|sp|P13749|1A04_PANTR CHLA class I histoc ( 365) 2329 511.2 1.3e-142 gi|1468953|dbj|BAA05549.1| HLA-A*2404 (HLA-A24AK) ( 365) 2328 511.0 1.5e-142 gi|8571968|gb|AAF76942.1|AF179640_1 MHC class I an ( 365) 2327 510.8 1.7e-142 >>gi|62087814|dbj|BAD92354.1| HLA class I histocompatibi (393 aa) initn: 2713 init1: 2713 opt: 2713 Z-score: 3162.6 bits: 594.0 E(): 1.6e-167 Smith-Waterman score: 2713; 100.000% identity (100.000% similar) in 393 aa overlap (1-393:1-393) 10 20 30 40 50 60 hh1341 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFD 10 20 30 40 50 60 70 80 90 100 110 120 hh1341 SDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQI 70 80 90 100 110 120 130 140 150 160 170 180 hh1341 MYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 MYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRR 130 140 150 160 170 180 190 200 210 220 230 240 hh1341 VYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTW 190 200 210 220 230 240 250 260 270 280 290 300 hh1341 QRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELS 250 260 270 280 290 300 310 320 330 340 350 360 hh1341 SQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSLT 310 320 330 340 350 360 370 380 390 hh1341 ACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY ::::::::::::::::::::::::::::::::: gi|620 ACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY 370 380 390 >>gi|231347|sp|P30443|1A01_HUMAN HLA class I histocompat (365 aa) initn: 2478 init1: 2478 opt: 2478 Z-score: 2889.2 bits: 543.3 E(): 2.8e-152 Smith-Waterman score: 2478; 100.000% identity (100.000% similar) in 363 aa overlap (1-363:2-364) 10 20 30 40 50 hh1341 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 60 70 80 90 100 110 hh1341 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 70 80 90 100 110 120 120 130 140 150 160 170 hh1341 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 130 140 150 160 170 180 180 190 200 210 220 230 hh1341 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 240 250 260 270 280 290 hh1341 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 300 310 320 330 340 350 hh1341 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 310 320 330 340 350 360 360 370 380 390 hh1341 TACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY :::: gi|231 TACKV >>gi|14970572|emb|CAC44381.1| MHC class I antigen [Homo (365 aa) initn: 2471 init1: 2471 opt: 2471 Z-score: 2881.0 bits: 541.8 E(): 7.8e-152 Smith-Waterman score: 2471; 99.725% identity (100.000% similar) in 363 aa overlap (1-363:2-364) 10 20 30 40 50 hh1341 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|149 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQLVRF 10 20 30 40 50 60 60 70 80 90 100 110 hh1341 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 70 80 90 100 110 120 120 130 140 150 160 170 hh1341 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 130 140 150 160 170 180 180 190 200 210 220 230 hh1341 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 240 250 260 270 280 290 hh1341 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 300 310 320 330 340 350 hh1341 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 310 320 330 340 350 360 360 370 380 390 hh1341 TACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY :::: gi|149 TACKV >>gi|53850041|emb|CAH25490.1| MHC class I antigen [Homo (365 aa) initn: 2470 init1: 2470 opt: 2470 Z-score: 2879.9 bits: 541.6 E(): 9.1e-152 Smith-Waterman score: 2470; 99.725% identity (99.725% similar) in 363 aa overlap (1-363:2-364) 10 20 30 40 50 hh1341 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|538 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 60 70 80 90 100 110 hh1341 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|538 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 70 80 90 100 110 120 120 130 140 150 160 170 hh1341 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|538 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 130 140 150 160 170 180 180 190 200 210 220 230 hh1341 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|538 RVYLEGTCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 240 250 260 270 280 290 hh1341 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|538 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 300 310 320 330 340 350 hh1341 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|538 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 310 320 330 340 350 360 360 370 380 390 hh1341 TACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY :::: gi|538 TACKV >>gi|460242|gb|AAA80569.1| HLA-A-0102 allele (365 aa) initn: 2459 init1: 2459 opt: 2459 Z-score: 2867.1 bits: 539.2 E(): 4.7e-151 Smith-Waterman score: 2459; 99.449% identity (99.449% similar) in 363 aa overlap (1-363:2-364) 10 20 30 40 50 hh1341 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF ::::::::::::::::::::::::::::::: ::::::: ::::::::::::::::::: gi|460 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFSTSVSRPGSGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 60 70 80 90 100 110 hh1341 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|460 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 70 80 90 100 110 120 120 130 140 150 160 170 hh1341 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|460 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 130 140 150 160 170 180 180 190 200 210 220 230 hh1341 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|460 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 240 250 260 270 280 290 hh1341 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|460 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 300 310 320 330 340 350 hh1341 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|460 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 310 320 330 340 350 360 360 370 380 390 hh1341 TACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY :::: gi|460 TACKV >>gi|123261751|emb|CAI17777.2| major histocompatibility (371 aa) initn: 2324 init1: 2324 opt: 2456 Z-score: 2863.5 bits: 538.6 E(): 7.5e-151 Smith-Waterman score: 2456; 98.374% identity (98.374% similar) in 369 aa overlap (1-363:2-370) 10 20 30 40 50 hh1341 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 60 70 80 90 100 110 hh1341 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 70 80 90 100 110 120 120 130 140 150 160 170 hh1341 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 130 140 150 160 170 180 180 190 200 210 220 230 hh1341 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 240 250 260 270 280 290 hh1341 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 300 310 320 330 340 350 hh1341 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSS------DRKGGSYTQAASSDSAQ ::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|123 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSGGEGVKDRKGGSYTQAASSDSAQ 310 320 330 340 350 360 360 370 380 390 hh1341 GSDVSLTACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY :::::::::: gi|123 GSDVSLTACKV 370 >>gi|231370|sp|P30455|1A36_HUMAN HLA class I histocompat (365 aa) initn: 2453 init1: 2453 opt: 2453 Z-score: 2860.1 bits: 537.9 E(): 1.2e-150 Smith-Waterman score: 2453; 99.174% identity (99.449% similar) in 363 aa overlap (1-363:2-364) 10 20 30 40 50 hh1341 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 60 70 80 90 100 110 hh1341 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 70 80 90 100 110 120 120 130 140 150 160 170 hh1341 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 130 140 150 160 170 180 180 190 200 210 220 230 hh1341 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT :::::: ::. ::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 RVYLEGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 240 250 260 270 280 290 hh1341 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 300 310 320 330 340 350 hh1341 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|231 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 310 320 330 340 350 360 360 370 380 390 hh1341 TACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY :::: gi|231 TACKV >>gi|88853307|emb|CAJ70622.1| MHC class I antigen [Homo (365 aa) initn: 2449 init1: 2449 opt: 2449 Z-score: 2855.4 bits: 537.1 E(): 2.1e-150 Smith-Waterman score: 2449; 98.898% identity (99.174% similar) in 363 aa overlap (1-363:2-364) 10 20 30 40 50 hh1341 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF ::::::::::::::::::::::::::::::: ::::::: ::::::::::::::::::: gi|888 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFSTSVSRPGSGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 60 70 80 90 100 110 hh1341 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|888 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTVQ 70 80 90 100 110 120 120 130 140 150 160 170 hh1341 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|888 RMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 130 140 150 160 170 180 180 190 200 210 220 230 hh1341 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|888 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 240 250 260 270 280 290 hh1341 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|888 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 300 310 320 330 340 350 hh1341 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|888 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 310 320 330 340 350 360 360 370 380 390 hh1341 TACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY :::: gi|888 TACKV >>gi|642082|gb|AAA61826.1| MHC class I alpha chain (365 aa) initn: 2414 init1: 2414 opt: 2414 Z-score: 2814.6 bits: 529.5 E(): 3.9e-148 Smith-Waterman score: 2414; 97.245% identity (98.898% similar) in 363 aa overlap (1-363:2-364) 10 20 30 40 50 hh1341 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF ::. ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|642 MAVLPPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 60 70 80 90 100 110 hh1341 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ :::::::.::::::::::::::::::::::.::::::::.:::::::::::::::::::: gi|642 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAHSQTDRVNLGTLRGYYNQSEDGSHTIQ 70 80 90 100 110 120 120 130 140 150 160 170 hh1341 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR :::::::: ::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|642 IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQR 130 140 150 160 170 180 180 190 200 210 220 230 hh1341 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT :.:::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|642 RAYLEGLCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 240 250 260 270 280 290 hh1341 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|642 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP 250 260 270 280 290 300 300 310 320 330 340 350 hh1341 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|642 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 310 320 330 340 350 360 360 370 380 390 hh1341 TACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY :::: gi|642 TACKV >>gi|122157|sp|P13746|1A11_HUMAN HLA class I histocompat (365 aa) initn: 2413 init1: 2413 opt: 2413 Z-score: 2813.5 bits: 529.3 E(): 4.6e-148 Smith-Waterman score: 2413; 96.970% identity (99.725% similar) in 363 aa overlap (1-363:2-364) 10 20 30 40 50 hh1341 AVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|122 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 60 70 80 90 100 110 hh1341 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ :::::::.::::::::::::::::::::::.::.:::::..::::::::::::::::::: gi|122 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQ 70 80 90 100 110 120 120 130 140 150 160 170 hh1341 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::. gi|122 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQ 130 140 150 160 170 180 180 190 200 210 220 230 hh1341 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT :.:::::::. ::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 RAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 240 250 260 270 280 290 hh1341 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 300 310 320 330 340 350 hh1341 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 310 320 330 340 350 360 360 370 380 390 hh1341 TACKGESLEGLMCVGCWVEQWTQLCYGVSLRWMY :::: gi|122 TACKV 393 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 11:47:07 2008 done: Tue Aug 12 11:49:38 2008 Total Scan time: 817.570 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]