hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-11494093/chunk_1/iprscan-20080812-11494093.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh13418 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00129.9.ls Class I Histocompatibility antigen, domains 479.2 4.5e-141 1 PF00129.9.fs Class I Histocompatibility antigen, domains 477.2 1.8e-140 1 PF07654.6.fs Immunoglobulin C1-set domain 103.6 8.3e-31 1 PF07654.6.ls Immunoglobulin C1-set domain 105.5 1.5e-28 1 PF00047.15.fs Immunoglobulin domain 47.8 2.3e-12 1 PF06623.2.fs MHC_I C-terminus 44.7 5e-12 1 PF00047.15.ls Immunoglobulin domain 49.8 8.5e-12 1 PF06623.2.ls MHC_I C-terminus 46.7 7.3e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00129.9.fs 1/1 24 202 .. 1 180 [] 477.2 1.8e-140 PF00129.9.ls 1/1 24 202 .. 1 180 [] 479.2 4.5e-141 PF07654.6.fs 1/1 207 294 .. 1 92 [] 103.6 8.3e-31 PF07654.6.ls 1/1 207 294 .. 1 92 [] 105.5 1.5e-28 PF00047.15.ls 1/1 219 284 .. 1 65 [] 49.8 8.5e-12 PF00047.15.fs 1/1 219 284 .. 1 65 [] 47.8 2.3e-12 PF06623.2.fs 1/1 335 363 .. 1 29 [] 44.7 5e-12 PF06623.2.ls 1/1 335 363 .. 1 29 [] 46.7 7.3e-11 Alignments of top-scoring domains: PF00129.9.fs: domain 1 of 1, from 24 to 202: score 477.2, E = 1.8e-140 *->gsHSLrYFyTAVSrPGlGePrFiaVGYVDDtQFVRFDSdaenpRmeP gsHS+rYF T+VSrPG+GePrFiaVGYVDDtQFVRFDSda++++meP hh13418 24 GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEP 70 rapWieqEGpeYWereTqiaKaneqifRvnLrtLlgYYNQSegGSHTlQw rapWieqEGpeYW++eT+++Ka+ q++R nL+tL+gYYNQSe+GSHT+Q hh13418 71 RAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQI 120 MyGCDvgpDgrllRGYeQfAYDGkDYIaLNeDLrsWTAaDtAAqITkrKW MyGCDvgpDgr+lRGY+Q+AYDGkDYIaLNeDLrsWTAaD+AAqITkrKW hh13418 121 MYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKW 170 EaageAerkeRaYLEgeCvEwLrRYLEnGKetL<-* Ea ++Ae+ +R YLEg Cv+ LrRYLEnGKetL hh13418 171 EAVHAAEQ-RRVYLEGRCVDGLRRYLENGKETL 202 PF00129.9.ls: domain 1 of 1, from 24 to 202: score 479.2, E = 4.5e-141 *->gsHSLrYFyTAVSrPGlGePrFiaVGYVDDtQFVRFDSdaenpRmeP gsHS+rYF T+VSrPG+GePrFiaVGYVDDtQFVRFDSda++++meP hh13418 24 GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEP 70 rapWieqEGpeYWereTqiaKaneqifRvnLrtLlgYYNQSegGSHTlQw rapWieqEGpeYW++eT+++Ka+ q++R nL+tL+gYYNQSe+GSHT+Q hh13418 71 RAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQI 120 MyGCDvgpDgrllRGYeQfAYDGkDYIaLNeDLrsWTAaDtAAqITkrKW MyGCDvgpDgr+lRGY+Q+AYDGkDYIaLNeDLrsWTAaD+AAqITkrKW hh13418 121 MYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKW 170 EaageAerkeRaYLEgeCvEwLrRYLEnGKetL<-* Ea ++Ae+ +R YLEg Cv+ LrRYLEnGKetL hh13418 171 EAVHAAEQ-RRVYLEGRCVDGLRRYLENGKETL 202 PF07654.6.fs: domain 1 of 1, from 207 to 294: score 103.6, E = 8.3e-31 *->ppgspepel.....gkpntLvClVtgFyPpdItVtWlkNGqevtegv pp +++ +++ +++++tL C++ gFyP++It tW+++G+++t++ hh13418 207 PP-KTH-MThhpisDHEATLRCWALGFYPAEITLTWQRDGEDQTQDT 251 esteplpkngDgtYqlsSyLtftasepesgdtYtCrVeHesLkvenePlt e e++p gDgt+q++ + ++ ++ +YtC+V+He+L+ +Plt hh13418 252 ELVETRP-AGDGTFQKWAAVVVP---SGEEQRYTCHVQHEGLP---KPLT 294 <-* hh13418 - - PF07654.6.ls: domain 1 of 1, from 207 to 294: score 105.5, E = 1.5e-28 *->ppgspepel.....gkpntLvClVtgFyPpdItVtWlkNGqevtegv pp +++ +++ +++++tL C++ gFyP++It tW+++G+++t++ hh13418 207 PP-KTH-MThhpisDHEATLRCWALGFYPAEITLTWQRDGEDQTQDT 251 esteplpkngDgtYqlsSyLtftasepesgdtYtCrVeHesLkvenePlt e e++p gDgt+q++ + ++ ++ +YtC+V+He+L+ +Plt hh13418 252 ELVETRP-AGDGTFQKWAAVVVP---SGEEQRYTCHVQHEGLP---KPLT 294 <-* hh13418 - - PF00047.15.ls: domain 1 of 1, from 219 to 284: score 49.8, E = 8.5e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + +tL+C++ gf+p ++t+tW+r+g ++t++++ ++++ gd+t+q hh13418 219 DHEATLRCWALGFYPAEITLTWQRDGEdQTqDTELVETRPAGDGTFQ 265 tsLtitnvtpeDggtYtCvv<-* + +v+++ + YtC+v hh13418 266 K-WAAVVVPSGEEQRYTCHV 284 PF00047.15.fs: domain 1 of 1, from 219 to 284: score 47.8, E = 2.3e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + +tL+C++ gf+p ++t+tW+r+g ++t++++ ++++ gd+t+q hh13418 219 DHEATLRCWALGFYPAEITLTWQRDGEdQTqDTELVETRPAGDGTFQ 265 tsLtitnvtpeDggtYtCvv<-* + +v+++ + YtC+v hh13418 266 K-WAAVVVPSGEEQRYTCHV 284 PF06623.2.fs: domain 1 of 1, from 335 to 363: score 44.7, E = 5e-12 *->ntGgKggdyaqapsrDSaqsSDvSLtdck<-* ++++Kgg+y+qa+s+DSaq+SDvSLt+ck hh13418 335 SSDRKGGSYTQAASSDSAQGSDVSLTACK 363 PF06623.2.ls: domain 1 of 1, from 335 to 363: score 46.7, E = 7.3e-11 *->ntGgKggdyaqapsrDSaqsSDvSLtdck<-* ++++Kgg+y+qa+s+DSaq+SDvSLt+ck hh13418 335 SSDRKGGSYTQAASSDSAQGSDVSLTACK 363 //