hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-11561469/chunk_1/iprscan-20080812-11561469.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh13481 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02786.7.ls Carbamoyl-phosphate synthase L chain, 609.4 3.1e-180 2 PF02786.7.fs Carbamoyl-phosphate synthase L chain, 608.4 5.9e-180 3 PF02787.9.fs Carbamoyl-phosphate synthetase large 251.9 2.9e-95 1 PF00988.13.ls Carbamoyl-phosphate synthase small ch 326.6 4e-95 1 PF00988.13.fs Carbamoyl-phosphate synthase small ch 324.7 1.5e-94 1 PF02787.9.ls Carbamoyl-phosphate synthetase large 253.9 3.2e-73 1 PF00289.12.ls Carbamoyl-phosphate synthase L chain, 233.5 4.2e-67 2 PF00289.12.fs Carbamoyl-phosphate synthase L chain, 229.8 5.2e-66 2 PF00117.18.ls Glutamine amidotransferase class-I 205.9 8.4e-59 1 PF00117.18.fs Glutamine amidotransferase class-I 204.2 2.7e-58 1 PF02142.12.ls MGS-like domain 118.3 2.1e-32 1 PF02142.12.fs MGS-like domain 116.5 7e-32 1 PF02222.12.ls ATP-grasp domain -37.9 5.4e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00988.13.ls 1/1 54 203 .. 1 163 [] 326.6 4e-95 PF00988.13.fs 1/1 54 203 .. 1 163 [] 324.7 1.5e-94 PF00117.18.fs 1/1 231 407 .. 1 268 [] 204.2 2.7e-58 PF00117.18.ls 1/1 231 407 .. 1 268 [] 205.9 8.4e-59 PF00289.12.fs 1/2 431 554 .. 1 130 [] 212.1 6.9e-61 PF00289.12.ls 1/2 431 554 .. 1 130 [] 214.0 3.2e-61 PF02786.7.ls 1/2 556 788 .. 1 242 [] 550.3 1.9e-162 PF02786.7.fs 1/3 556 788 .. 1 242 [] 548.3 7.3e-162 PF02787.9.fs 1/1 849 972 .. 1 128 [] 251.9 2.9e-95 PF02787.9.ls 1/1 849 972 .. 1 128 [] 253.9 3.2e-73 PF00289.12.ls 2/2 982 1096 .. 1 130 [] 19.5 3.4e-05 PF00289.12.fs 2/2 982 1096 .. 1 130 [] 17.7 9.8e-05 PF02786.7.fs 2/3 1098 1188 .. 1 98 [. 51.6 1.5e-14 PF02786.7.ls 2/2 1098 1308 .. 1 242 [] 59.1 1.6e-15 PF02222.12.ls 1/1 1098 1267 .. 1 191 [] -37.9 5.4e-05 PF02142.12.fs 1/1 1383 1475 .. 1 121 [] 116.5 7e-32 PF02142.12.ls 1/1 1383 1475 .. 1 121 [] 118.3 2.1e-32 Alignments of top-scoring domains: PF00988.13.ls: domain 1 of 1, from 54 to 203: score 326.6, E = 4e-95 *->kkAtLvLEDGtvfeGySFGAegsvvGEvVFnTGMtGYqEsLTDPSYr + A+ vLEDGt ++GySFG++ sv+GEvVFnTG+ GY+E++TDP Y+ hh13481 54 QTAHIVLEDGTKMKGYSFGHPSSVAGEVVFNTGLGGYPEAITDPAYK 100 GQILvlTYPlIGNYGVnstearDdfeegLpkyfESdgrIhvaGLvVrelc GQIL++ +P+IGN G ++t+a+D++ gL+ky ES+ +I+v+GL V +++ hh13481 101 GQILTMANPIIGNGGAPDTTALDEL--GLSKYLESN-GIKVSGLLVLDYS 147 kepSnWratkSLddwLkeekIPGIaGIDTRaLTrklRekGtmlGkIslst k + +W+atkSL++wL+eek+P+I+G+DTR+LT+++R+kGtmlGkI hh13481 148 KDYNHWLATKSLGQWLQEEKVPAIYGVDTRMLTKIIRDKGTMLGKI---- 193 adldeeelleravafp<-* e+++++v+f+ hh13481 194 ------EFEGQPVDFV 203 PF00988.13.fs: domain 1 of 1, from 54 to 203: score 324.7, E = 1.5e-94 *->kkAtLvLEDGtvfeGySFGAegsvvGEvVFnTGMtGYqEsLTDPSYr + A+ vLEDGt ++GySFG++ sv+GEvVFnTG+ GY+E++TDP Y+ hh13481 54 QTAHIVLEDGTKMKGYSFGHPSSVAGEVVFNTGLGGYPEAITDPAYK 100 GQILvlTYPlIGNYGVnstearDdfeegLpkyfESdgrIhvaGLvVrelc GQIL++ +P+IGN G ++t+a+D++ gL+ky ES+ +I+v+GL V +++ hh13481 101 GQILTMANPIIGNGGAPDTTALDEL--GLSKYLESN-GIKVSGLLVLDYS 147 kepSnWratkSLddwLkeekIPGIaGIDTRaLTrklRekGtmlGkIslst k + +W+atkSL++wL+eek+P+I+G+DTR+LT+++R+kGtmlGkI hh13481 148 KDYNHWLATKSLGQWLQEEKVPAIYGVDTRMLTKIIRDKGTMLGKI---- 193 adldeeelleravafp<-* e+++++v+f+ hh13481 194 ------EFEGQPVDFV 203 PF00117.18.fs: domain 1 of 1, from 231 to 407: score 204.2, E = 2.7e-58 *->lliDngdSftynlvralrelGcElegvevevvpndtsfndaeeietl +++D+g ++ n++r l+++G +ev++vp+++ d+ ++ hh13481 231 VAVDCG--IKNNVIRLLVKRG-----AEVHLVPWNH---DFTKM--- 264 eeieelllnpdgiiiSpGPGdPgaAmdeLkaggsieaikelren.lkiPi ++dgi+i +GPG+P+ a+ i+++++++e ++k P hh13481 265 --------EYDGILIAGGPGNPAL------AEPLIQNVRKILESdRKEPL 300 LGICLGhQllalafGgnvglgAnStEFdpeTkwpglkvvpgevrleasDe +GI G+ + +la G+ k++ hh13481 301 FGISTGNLITGLAAGA--------------------KTY----------- 319 nimekakkephhGknspvghdgcglpgtvslaplfyglpnpfivrryHsy k+ ++G+n+pv + ++ fi++++H+y hh13481 320 ----KMS-MANRGQNQPVLN---------------ITNKQAFITAQNHGY 349 avdeeyiestlPegkglevtaasdddggeiegeimgirhkenHPfifGVQ a d++ lP+g ++ ++++ +d +++gi+h + P +f+VQ hh13481 350 ALDNA-----LPAG--WKPLFVNVNDQ-----TNEGIMHESK-P-FFAVQ 385 FHPEssltpgGpelLfnffikl<-* FHPE++++p ++e+Lf+ f l hh13481 386 FHPEVTPGPIDTEYLFDSFFSL 407 PF00117.18.ls: domain 1 of 1, from 231 to 407: score 205.9, E = 8.4e-59 *->lliDngdSftynlvralrelGcElegvevevvpndtsfndaeeietl +++D+g ++ n++r l+++G +ev++vp+++ d+ ++ hh13481 231 VAVDCG--IKNNVIRLLVKRG-----AEVHLVPWNH---DFTKM--- 264 eeieelllnpdgiiiSpGPGdPgaAmdeLkaggsieaikelren.lkiPi ++dgi+i +GPG+P+ a+ i+++++++e ++k P hh13481 265 --------EYDGILIAGGPGNPAL------AEPLIQNVRKILESdRKEPL 300 LGICLGhQllalafGgnvglgAnStEFdpeTkwpglkvvpgevrleasDe +GI G+ + +la G+ k++ hh13481 301 FGISTGNLITGLAAGA--------------------KTY----------- 319 nimekakkephhGknspvghdgcglpgtvslaplfyglpnpfivrryHsy k+ ++G+n+pv + ++ fi++++H+y hh13481 320 ----KMS-MANRGQNQPVLN---------------ITNKQAFITAQNHGY 349 avdeeyiestlPegkglevtaasdddggeiegeimgirhkenHPfifGVQ a d++ lP+g ++ ++++ +d +++gi+h + P +f+VQ hh13481 350 ALDNA-----LPAG--WKPLFVNVNDQ-----TNEGIMHESK-P-FFAVQ 385 FHPEssltpgGpelLfnffikl<-* FHPE++++p ++e+Lf+ f l hh13481 386 FHPEVTPGPIDTEYLFDSFFSL 407 PF00289.12.fs: domain 1 of 2, from 431 to 554: score 212.1, E = 6.9e-61 *->dikKiLiansGeiaigqarefdysGYEtFderiqavaalkeedLkan +++K+Li++sG+++igqa+efdysG +qav+a+kee+ ++ hh13481 431 EVSKVLILGSGGLSIGQAGEFDYSG-------SQAVKAMKEEN--VK 468 tilvnladatvqtgegl...ADkvYflpksylnvdkIIeaarpdgvlath t+l+n+++a+vqt+e++ ++AD+vYflp+++++v+++I+a++pdg+ + + hh13481 469 TVLMNPNIASVQTNEVGlkqADTVYFLPITPQFVTEVIKAEQPDGLILGM 518 gGqgfLnenveLaeagvleeygvkfiGppaeaIral<-* gGq++Ln++veL ++gvl+eygvk++G+++e+I+a+ hh13481 519 GGQTALNCGVELFKRGVLKEYGVKVLGTSVESIMAT 554 PF00289.12.ls: domain 1 of 2, from 431 to 554: score 214.0, E = 3.2e-61 *->dikKiLiansGeiaigqarefdysGYEtFderiqavaalkeedLkan +++K+Li++sG+++igqa+efdysG +qav+a+kee+ ++ hh13481 431 EVSKVLILGSGGLSIGQAGEFDYSG-------SQAVKAMKEEN--VK 468 tilvnladatvqtgegl...ADkvYflpksylnvdkIIeaarpdgvlath t+l+n+++a+vqt+e++ ++AD+vYflp+++++v+++I+a++pdg+ + + hh13481 469 TVLMNPNIASVQTNEVGlkqADTVYFLPITPQFVTEVIKAEQPDGLILGM 518 gGqgfLnenveLaeagvleeygvkfiGppaeaIral<-* gGq++Ln++veL ++gvl+eygvk++G+++e+I+a+ hh13481 519 GGQTALNCGVELFKRGVLKEYGVKVLGTSVESIMAT 554 PF02786.7.ls: domain 1 of 2, from 556 to 788: score 550.3, E = 1.9e-162 *->DkvsfkaamkeagvptvpstagPlvetleeAlaaAkeiGYPViIkAA D+++f ++++e++++++ps+a+ e++e+Al+aA++iGYPV+I++A hh13481 556 DRQLFSDKLNEINEKIAPSFAV---ESIEDALKAADTIGYPVMIRSA 599 fglGGkGmriarneeelaelfasAlaeApaAFGndqvLvEKsLkgpKeIE ++lGG+G++i++n+e+l++l ++A+a++ +q+LvEKs++g+KeIE hh13481 600 YALGGLGSGICPNRETLMDLSTKAFAMT------NQILVEKSVTGWKEIE 643 yeVlrDahGNcItvcnrEcsdqrGirtqksievAPSqtLtdeerqmlrea yeV+rDa++Nc+tvcn+E++d++G++t++s++vAP+qtL+++e+qmlr++ hh13481 644 YEVVRDADDNCVTVCNMENVDAMGVHTGDSVVVAPAQTLSNAEFQMLRRT 693 AvkiarelGyvGagtveFlldpdsgeyyfIEvNtRlsvesalaekaTGyd +++++r+lG+vG+++++F+l+p+s+ey++IEvN+Rls++sala+kaTGy+ hh13481 694 SINVVRHLGIVGECNIQFALHPTSMEYCIIEVNARLSRSSALASKATGYP 743 LakeaaKIAlGetLpelkNpvTgkTtAcFEPSLDYvVvKIPrwdl<-* La++aaKIAlG++Lpe+kN+v+gkT+AcFEPSLDY+V+KIPrwdl hh13481 744 LAFIAAKIALGIPLPEIKNVVSGKTSACFEPSLDYMVTKIPRWDL 788 PF02786.7.fs: domain 1 of 3, from 556 to 788: score 548.3, E = 7.3e-162 *->DkvsfkaamkeagvptvpstagPlvetleeAlaaAkeiGYPViIkAA D+++f ++++e++++++ps+a+ e++e+Al+aA++iGYPV+I++A hh13481 556 DRQLFSDKLNEINEKIAPSFAV---ESIEDALKAADTIGYPVMIRSA 599 fglGGkGmriarneeelaelfasAlaeApaAFGndqvLvEKsLkgpKeIE ++lGG+G++i++n+e+l++l ++A+a++ +q+LvEKs++g+KeIE hh13481 600 YALGGLGSGICPNRETLMDLSTKAFAMT------NQILVEKSVTGWKEIE 643 yeVlrDahGNcItvcnrEcsdqrGirtqksievAPSqtLtdeerqmlrea yeV+rDa++Nc+tvcn+E++d++G++t++s++vAP+qtL+++e+qmlr++ hh13481 644 YEVVRDADDNCVTVCNMENVDAMGVHTGDSVVVAPAQTLSNAEFQMLRRT 693 AvkiarelGyvGagtveFlldpdsgeyyfIEvNtRlsvesalaekaTGyd +++++r+lG+vG+++++F+l+p+s+ey++IEvN+Rls++sala+kaTGy+ hh13481 694 SINVVRHLGIVGECNIQFALHPTSMEYCIIEVNARLSRSSALASKATGYP 743 LakeaaKIAlGetLpelkNpvTgkTtAcFEPSLDYvVvKIPrwdl<-* La++aaKIAlG++Lpe+kN+v+gkT+AcFEPSLDY+V+KIPrwdl hh13481 744 LAFIAAKIALGIPLPEIKNVVSGKTSACFEPSLDYMVTKIPRWDL 788 PF02787.9.fs: domain 1 of 1, from 849 to 972: score 251.9, E = 2.9e-95 *->lreeLrtPtdrRlFaiaeAlrrGgysVdeiheLTkIDkWFLhKlknI lr+eL++P+ +R++aia+A+ ++ +s+dei +LT IDkWFL+K+++I hh13481 849 LRKELSEPSSTRIYAIAKAIDDN-MSLDEIEKLTYIDKWFLYKMRDI 894 vklqEkqLksykldlselpkelLrkAKqlGFSDrQIAkllgsTEleVRkl ++ Ek+Lk ++++ +++e+L++AK+ GFSD+QI+k+lg TE++ R+l hh13481 895 LNM-EKTLKGLNSES--MTEETLKRAKEIGFSDKQISKCLGLTEAQTREL 941 RkelGIvPvvKqIDTcAAEFpAqTnYLYsTY<-* R +++I+P+vKqIDT+AAE+p++TnYLY TY hh13481 942 RLKKNIHPWVKQIDTLAAEYPSVTNYLYVTY 972 PF02787.9.ls: domain 1 of 1, from 849 to 972: score 253.9, E = 3.2e-73 *->lreeLrtPtdrRlFaiaeAlrrGgysVdeiheLTkIDkWFLhKlknI lr+eL++P+ +R++aia+A+ ++ +s+dei +LT IDkWFL+K+++I hh13481 849 LRKELSEPSSTRIYAIAKAIDDN-MSLDEIEKLTYIDKWFLYKMRDI 894 vklqEkqLksykldlselpkelLrkAKqlGFSDrQIAkllgsTEleVRkl ++ Ek+Lk ++++ +++e+L++AK+ GFSD+QI+k+lg TE++ R+l hh13481 895 LNM-EKTLKGLNSES--MTEETLKRAKEIGFSDKQISKCLGLTEAQTREL 941 RkelGIvPvvKqIDTcAAEFpAqTnYLYsTY<-* R +++I+P+vKqIDT+AAE+p++TnYLY TY hh13481 942 RLKKNIHPWVKQIDTLAAEYPSVTNYLYVTY 972 PF00289.12.ls: domain 2 of 2, from 982 to 1096: score 19.5, E = 3.4e-05 *->dikKiLiansGeiaigqarefdysGYEtFderiqavaalkeedLkan d +++ G+ ig efd + + ++ l+ + + hh13481 982 DDHGMMVLGCGPYHIGSSVEFDWCA-------VSSIRTLRQLG--KK 1019 tilvnladatvqtgeglADkvYflpksylnvdkIIeaarpdgvlathgGq t+ vn +++tv t+ Dk Yf+ s + + I +++ g gGq hh13481 1020 TVVVNCNPETVSTDFDECDKLYFEELSLERILDIYHQEACGGCIISVGGQ 1069 gfLnenveLaeagvleeygvkfiGppaeaIral<-* n++v L + + gvk++G+++ I+ + hh13481 1070 IPNNLAVPLYK----N--GVKIMGTSPLQIDRA 1096 PF00289.12.fs: domain 2 of 2, from 982 to 1096: score 17.7, E = 9.8e-05 *->dikKiLiansGeiaigqarefdysGYEtFderiqavaalkeedLkan d +++ G+ ig efd + + ++ l+ + + hh13481 982 DDHGMMVLGCGPYHIGSSVEFDWCA-------VSSIRTLRQLG--KK 1019 tilvnladatvqtgeglADkvYflpksylnvdkIIeaarpdgvlathgGq t+ vn +++tv t+ Dk Yf+ s + + I +++ g gGq hh13481 1020 TVVVNCNPETVSTDFDECDKLYFEELSLERILDIYHQEACGGCIISVGGQ 1069 gfLnenveLaeagvleeygvkfiGppaeaIral<-* n++v L + + gvk++G+++ I+ + hh13481 1070 IPNNLAVPLYK----N--GVKIMGTSPLQIDRA 1096 PF02786.7.fs: domain 2 of 3, from 1098 to 1188: score 51.6, E = 1.5e-14 *->DkvsfkaamkeagvptvpstagPlvetleeAlaaAkeiGYPViIkAA D++ f a ++e++v +p a+ +tl eAl++Ak + YP++ +++ hh13481 1098 DRSIFSAVLDELKVAQAPWKAV---NTLNEALEFAKSVDYPCLLRPS 1141 fglGGkGmriarneeelaelfasAlaeApaAFGndqvLvEKsLkgpKeIE + l G m ++ +e+e+++ +++A++ + + v + K+++g +e+E hh13481 1142 YVLSGSAMNVVFSEDEMKKFLEEATRVSQ----EHPVVLTKFVEGAREVE 1187 y<-* + hh13481 1188 M 1188 PF02786.7.ls: domain 2 of 2, from 1098 to 1308: score 59.1, E = 1.6e-15 *->DkvsfkaamkeagvptvpstagPlvetleeAlaaAkeiGYPViIkAA D++ f a ++e++v +p a+ +tl eAl++Ak + YP++ +++ hh13481 1098 DRSIFSAVLDELKVAQAPWKAV---NTLNEALEFAKSVDYPCLLRPS 1141 fglGGkGmriarneeelaelfasAlaeApaAFGndqvLvEKsLkgpKeIE + l G m ++ +e+e+++ +++A++ + + v + K+++g +e+E hh13481 1142 YVLSGSAMNVVFSEDEMKKFLEEATRVSQ----EHPVVLTKFVEGAREVE 1187 yeVlrDahGNcItvcnrEcsdqrGirtqksievAPSqtLtdeerqmlrea + ++ ++G +I + E + G++ ++ P qt++ +++ a hh13481 1188 MDAVG-KDGRVISHAISEHVEDAGVHSGDATLMLPTQTISQGAIEKVKDA 1236 AvkiarelGyvGagtveFlldpdsgeyyfIEvNtRlsvesalaekaTGyd kia++ ++G +v+Fl+ ++ +IE N R s++ + +k+ G+d hh13481 1237 TRKIAKAFAISGPFNVQFLVK--GNDVLVIECNLRASRSFPFVSKTLGVD 1284 LakeaaKIAlGetLpelkNpvTgkTtAcFEPSLDYvVvKIPrwdl<-* + +a K+ Ge +e+ + P d+ hh13481 1285 FIDVATKVMIGENVDEKHL---------------------PTLDH 1308 PF02222.12.ls: domain 1 of 1, from 1098 to 1267: score -37.9, E = 5.4e-05 *->DRlvqkellAkelGlptprfaaiesleEelkeaaqelgfPvVlKarr DR l +el+++ +++ a+++l+ e+ e+a+++++P+ l + hh13481 1098 DRSIFSAVL-DELKVAQAPWKAVNTLN-EALEFAKSVDYPCLLR-PS 1141 gGYDGKGqyvirseadlqqaleelkqGargggg.pliVEefVpFdrElSv +G v++se+++ ++lee+ r+++++p+++ +fV rE+ hh13481 1142 YVLSGSAMNVVFSEDEMKKFLEEA---TRVSQEhPVVLTKFVEGAREV-E 1187 lvvRsPsvdGetafYPvvetiqedGi......crlsvaPapipdaqqaqA + + ++dG++++ + e++ + G+++++ ++ l + i++ + +++ hh13481 1188 MDAV--GKDGRVISHAISEHVEDAGVhsgdatLMLPTQ--TISQGAIEKV 1233 aeiakriadeLggvGvfaVElFvtaedGdellvNElAPRPHNSGHwTLdg ++ +++ia+++ + G f V + v+ G ++lv +++ hh13481 1234 KDATRKIAKAFAISGPFNVQFLVK---GNDVLV--------------IEC 1266 a<-* hh13481 1267 N 1267 PF02142.12.fs: domain 1 of 1, from 1383 to 1475: score 116.5, E = 7e-32 *->glvelAkaLvelGkfellATgGTakfLaeaGipVtevvektgegErp +++ +A++L++ G f+l+AT+ T ++L ++++p+t+v+++ +eg+ p hh13481 1383 RFLGVAEQLHNEG-FKLFATEATSDWLNANNVPATPVAWPSQEGQNP 1428 gGRVKTLHPkIHGGILArRdlesildlikngeIdpIDLVIntlypfkatv l+si +li++g Id LVIn++ ++++ v hh13481 1429 S-------------------LSSIRKLIRDGSID---LVINLPNNNTKFV 1456 akpsitDgytirraaenidIPgpT<-* + D+y irr+a++ +IP+ T hh13481 1457 H-----DNYVIRRTAVDSGIPLLT 1475 PF02142.12.ls: domain 1 of 1, from 1383 to 1475: score 118.3, E = 2.1e-32 *->glvelAkaLvelGkfellATgGTakfLaeaGipVtevvektgegErp +++ +A++L++ G f+l+AT+ T ++L ++++p+t+v+++ +eg+ p hh13481 1383 RFLGVAEQLHNEG-FKLFATEATSDWLNANNVPATPVAWPSQEGQNP 1428 gGRVKTLHPkIHGGILArRdlesildlikngeIdpIDLVIntlypfkatv l+si +li++g Id LVIn++ ++++ v hh13481 1429 S-------------------LSSIRKLIRDGSID---LVINLPNNNTKFV 1456 akpsitDgytirraaenidIPgpT<-* + D+y irr+a++ +IP+ T hh13481 1457 H-----DNYVIRRTAVDSGIPLLT 1475 //