hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-11561469/chunk_1/iprscan-20080812-11561469.nocrc
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Query sequence: hh13481
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
TIGR01369     CPSaseII_lrg: carbamoyl-phosphate synth  1998.2          0   1
TIGR01368     CPSaseIIsmall: carbamoyl-phosphate synt   733.3   5.1e-218   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
TIGR01368       1/1      56   410 ..     1   383 []   733.3 5.1e-218
TIGR01369       1/1     427  1487 ..     1  1089 []  1998.2        0

Alignments of top-scoring domains:
TIGR01368: domain 1 of 1, from 56 to 410: score 733.3, E = 5.1e-218
                   *->AyLvLEDGTvfeGysFGaegtvaGEvVFNTgMTGYQEilTDPSYkGQ
                      A++vLEDGT ++GysFG++ +vaGEvVFNTg+ GY+E++TDP YkGQ
     hh13481    56    AHIVLEDGTKMKGYSFGHPSSVAGEVVFNTGLGGYPEAITDPAYKGQ 102  

                   IvvfTYPlIGNYGvNdeDarDElgL.KYFESkgkihvkGlVVrElsdryS
                   I+++++P IGN G +d+ a+DElgL+KY+ES+ +i+v+Gl+V ++s+ y+
     hh13481   103 ILTMANPIIGNGGAPDTTALDELGLsKYLESN-GIKVSGLLVLDYSKDYN 151  

                   nwrateSLdqfLkehgipgIyGvDTRaLVkkIRekGtmkgvIstedsnde
                   +w+at+SL+q+L+e+++p+IyGvDTR+L+k IR+kGtm+g+I +e     
     hh13481   152 HWLATKSLGQWLQEEKVPAIYGVDTRMLTKIIRDKGTMLGKIEFEG---- 197  

                   elvekakfesPdidgiNLVaeVStkepytwgqgtwnlwkffvakrngkkp
                   ++v    f++P+++  NL+aeVStk+++ +g                ++p
     hh13481   198 QPVD---FVDPNKQ--NLIAEVSTKDVKVYGK---------------GNP 227  

                   lrVvviDfGvKqNIlRrLvkrGcevtVVPydtdaeeIkkynPDGIFLSNG
                   ++Vv++D+G+K+N++R LvkrG+ev+ VP+++d++  k+++ DGI++  G
     hh13481   228 TKVVAVDCGIKNNVIRLLVKRGAEVHLVPWNHDFT--KMEY-DGILIAGG 274  

                   PGDPHaavepaietvrellea..kiPiFGICLGHQlLALAfGAkTyKLKF
                   PG+P a +ep+i++vr++le+++k P+FGI  G+ +++LA+GAkTyK+++
     hh13481   275 PGNP-ALAEPLIQNVRKILESdrKEPLFGISTGNLITGLAAGAKTYKMSM 323  

                   GHRGgNhPVkdlrtGrveITSQNHGYAVDeeSllagdlevTHvNLNDgtv
                    +RG+N+PV ++++++++IT+QNHGYA+D+ +l+ag +++++vN+ND+t+
     hh13481   324 ANRGQNQPVLNITNKQAFITAQNHGYALDN-ALPAG-WKPLFVNVNDQTN 371  

                   EGirhkdlPvFSVQYHPEAsPGPhDteyLFdeFidlikk<-*
                   EGi+h+++P+F+VQ+HPE +PGP DteyLFd+F+ likk   
     hh13481   372 EGIMHESKPFFAVQFHPEVTPGPIDTEYLFDSFFSLIKK    410  

TIGR01369: domain 1 of 1, from 427 to 1487: score 1998.2, E = 0
                   *->PkrtdIkkvLVIGSGPIvIGQAAEFDYSGsQAcKALKEEGyeViLVN
                        r  ++kvL++GSG+++IGQA+EFDYSGsQA KA KEE+  ++L N
     hh13481   427    ASRVEVSKVLILGSGGLSIGQAGEFDYSGSQAVKAMKEENVKTVLMN 473  

                   SNPATiMTDp...emADkvYiePlTpEaVekIIEKERPDgILptlGGQTA
                   +N+A ++T + + + AD vY++P+Tp +V+ +I+ E PDg+ +++GGQTA
     hh13481   474 PNIASVQTNEvglKQADTVYFLPITPQFVTEVIKAEQPDGLILGMGGQTA 523  

                   LNlAVeLeesGVLekYGVevLGTpveaIkkaEDRElFreaMkeIgepVPk
                   LN++VeL ++GVL++YGV+vLGT+ve+I+ +EDR+lF ++++eI+e++++
     hh13481   524 LNCGVELFKRGVLKEYGVKVLGTSVESIMATEDRQLFSDKLNEINEKIAP 573  

                   SeivhsveEAlkaAkeiGyPVIVRpAFTLGGtGGGIAsNeEELkeivera
                   S++v+s+e+AlkaA++iGyPV++R+A++LGG+G+GI++N+E L  +  +a
     hh13481   574 SFAVESIEDALKAADTIGYPVMIRSAYALGGLGSGICPNRETLMDLSTKA 623  

                   LsaSPInQvLvEkSlaGWKEiEYEVmRDskDNCItVCNMENfDPmGVHTG
                   ++++  nQ+LvEkS+ GWKEiEYEV+RD+ DNC+tVCNMEN D mGVHTG
     hh13481   624 FAMT--NQILVEKSVTGWKEIEYEVVRDADDNCVTVCNMENVDAMGVHTG 671  

                   DSIVVAPSQTLtDkEYQmLRdasikIIReLGivGGGCNvQFALdPdsgrY
                   DS VVAP+QTL++ E+QmLR +si + R+LGivG+ CN+QFAL+P s +Y
     hh13481   672 DSVVVAPAQTLSNAEFQMLRRTSINVVRHLGIVGE-CNIQFALHPTSMEY 720  

                   yVIEVNPRvSRSSALASKATGYPIAkvAAKLAvGYgLdELkNpvTktTpA
                    +IEVN+R+SRSSALASKATGYP+A++AAK+A+G++L+E+kN v+++T+A
     hh13481   721 CIIEVNARLSRSSALASKATGYPLAFIAAKIALGIPLPEIKNVVSGKTSA 770  

                   sFEPSLDYVVVKIPRWdFdKFegVdrkLGTqMKSVGEVMAIGRtFEEALQ
                   +FEPSLDY V+KIPRWd+d F+g+++++G++MKSVGEVMAIGRtFEE++Q
     hh13481   771 CFEPSLDYMVTKIPRWDLDRFHGTSSRIGSSMKSVGEVMAIGRTFEESFQ 820  

                   KAlRSLEigllGfefdlpdkeves.dedleealkkPtDrRPYWiFaIaeA
                   KAlR+  +++ Gf ++lp    ++++ dl+++l +P   R   i aIa+A
     hh13481   821 KALRMCHPSIEGFTPRLPMNKEWPsNLDLRKELSEPSSTR---IYAIAKA 867  

                   LrrGvsVeeihElTkIDrWFLhkiknIVelekeleelkNkltgIeeldke
                     +++s +ei  lT ID+WFL+k++ I ++ek+l++l N+++    ++ e
     hh13481   868 IDDNMSLDEIEKLTYIDKWFLYKMRDILNMEKTLKGL-NSES----MTEE 912  

                   lLrkaKklGFSDaqIArlvnvteaesieeleVRklRkelgiiPvyKrVDT
                   +L++aK++GFSD+qI++ +++tea        R lR +++i+P +K++DT
     hh13481   913 TLKRAKEIGFSDKQISKCLGLTEAQ------TRELRLKKNIHPWVKQIDT 956  

                   CAAEFeAkTpYlYSTYegerddveftekeKkkvlvLGSGPnRIGQGVEFD
                   +AAE++++T+YlY TY+g+++dv f +     ++vLG+GP+ IG++VEFD
     hh13481   957 LAAEYPSVTNYLYVTYNGQEHDVNFDDH---GMMVLGCGPYHIGSSVEFD 1003 

                   YCcVhavlaLreaGyetIMiNyNPETVSTDYDtsDRLYFEPltfEdVmnI
                   +C+V+ +++Lr++G++t+++N+NPETVSTD+D++D+LYFE+l+ E++++I
     hh13481  1004 WCAVSSIRTLRQLGKKTVVVNCNPETVSTDFDECDKLYFEELSLERILDI 1053 

                   ielEkpeGVIVqfGGQTplNlAkeLeeaGGvpILGTSpesIDrAEDReKF
                   + +E + G+I+++GGQ+p+NlA  L+++G v+I+GTSp  IDrAEDR  F
     hh13481  1054 YHQEACGGCIISVGGQIPNNLAVPLYKNG-VKIMGTSPLQIDRAEDRSIF 1102 

                   selLdeLGipQPewkiAtSvEeAkefAseiGYPvLVRPSYVLGGrAMeIv
                   s++LdeL++ Q++wk + +++eA efA+++ YP+L+RPSYVL+G+AM++v
     hh13481  1103 SAVLDELKVAQAPWKAVNTLNEALEFAKSVDYPCLLRPSYVLSGSAMNVV 1152 

                   yneEeLarYleeAvevSpehPVLiDKyledAvEidVDavsDGeeVlIpGI
                    +e+e +++leeA+ vS ehPV++ K++e+A E+++Dav  +++V+ ++I
     hh13481  1153 FSEDEMKKFLEEATRVSQEHPVVLTKFVEGAREVEMDAVGKDGRVISHAI 1202 

                   mEHIEeAGVHSGDStcvlPpqtLsedivkrikdivrkiAkeLnvkGLfNi
                   +EH+E AGVHSGD+t++lP qt+s++ ++++kd +rkiAk++ + G+fN+
     hh13481  1203 SEHVEDAGVHSGDATLMLPTQTISQGAIEKVKDATRKIAKAFAISGPFNV 1252 

                   QFvvkdEgevYVIEvNpRASRTVPFvSKatGiplaklAvrvmlGkkleel
                   QF+vk+ ++v VIE+N+RASR++PFvSK++G++++ +A++vm+G+++ e+
     hh13481  1253 QFLVKG-NDVLVIECNLRASRSFPFVSKTLGVDFIDVATKVMIGENVDEK 1301 

                   gkdlGvgkekes.kyvaVKvpvFSFsKLagvDpvLGPEMKSTGEvmgigr
                      ++++ +  + +yva+K+p+FS+ +L+++Dp+L  EM+STGEv+++g+
     hh13481  1302 HL-PTLDHPIIPaDYVAIKAPMFSWPRLRDADPILRCEMASTGEVACFGE 1350 

                   DleeAflKAmlssgnripkKGsvllsvrdkdKeelldlakkLaekGykiy
                     + AflKAmls+g++ip+K  +l+ +  + +++ l +a +L+  G+k+ 
     hh13481  1351 GIHTAFLKAMLSTGFKIPQK-GILIGIQQSFRPRFLGVAEQLHNEGFKLF 1399 

                   ateGTakfLeeaGIkaevvlkvsegredddCeaqPnil...elikngeie
                   ate+T++ L  + ++a+ v ++s+++       +P++ + ++li++g+i+
     hh13481  1400 ATEATSDWLNANNVPATPVAWPSQEG------QNPSLSsirKLIRDGSID 1443 

                   lvINltskgkegvllretatdGYkiRReAvdygVPlittletaeafleAl
                   lvINl+ + ++      ++ d Y+iRR+Avd g+Pl+t+ + +++f+eA+
     hh13481  1444 LVINLPNNNTK------FVHDNYVIRRTAVDSGIPLLTNFQVTKLFAEAV 1487 

                   <-*
                      
     hh13481     -     -    

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