hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-12031453/chunk_1/iprscan-20080812-12031453.nocrc
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Query sequence: hh13530
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF01467.16.fs Cytidylyltransferase                       148.5    3.3e-42   1
PF01467.16.ls Cytidylyltransferase                       150.2      5e-42   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF01467.16.fs   1/1      74   202 ..     1   185 []   148.5  3.3e-42
PF01467.16.ls   1/1      74   202 ..     1   185 []   150.2    5e-42

Alignments of top-scoring domains:
PF01467.16.fs: domain 1 of 1, from 74 to 202: score 148.5, E = 3.3e-42
                   *->lfgGtFDPiHlGHlrlleqAaelfdldeLvvgvpsdepphkdkkkkk
                      +++G FD++H GH+r l qA+ lf++ +L+vgv+sd+ +h  k+k+ 
     hh13530    74    YADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTH--KFKGF 118  

                   pifsaeeRlemlelaikvdpnlevddfEikrgisYTidTLkhlrelnpdl
                   ++++++eR+e l+++++vd+                              
     hh13530   119 TVMNEAERYEALRHCRYVDE------------------------------ 138  

                   dlyfiigadalvslrgwrgiqelleevqivvvnrpldygletvfkpkewl
                      +i+ a+       w+ ++e+le+++i++v+++++++           
     hh13530   139 ---VIRDAP-------WTLTPEFLEKHKIDFVAHDDIPYS---------- 168  

                   srvylreeldkyplgkivipdlpyndtegiSSTeIRer<-*
                       ++++ d+y++ k+++ ++p+ +tegiS+++I++r   
     hh13530   169 ----SAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITR    202  

PF01467.16.ls: domain 1 of 1, from 74 to 202: score 150.2, E = 5e-42
                   *->lfgGtFDPiHlGHlrlleqAaelfdldeLvvgvpsdepphkdkkkkk
                      +++G FD++H GH+r l qA+ lf++ +L+vgv+sd+ +h  k+k+ 
     hh13530    74    YADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTH--KFKGF 118  

                   pifsaeeRlemlelaikvdpnlevddfEikrgisYTidTLkhlrelnpdl
                   ++++++eR+e l+++++vd+                              
     hh13530   119 TVMNEAERYEALRHCRYVDE------------------------------ 138  

                   dlyfiigadalvslrgwrgiqelleevqivvvnrpldygletvfkpkewl
                      +i+ a+       w+ ++e+le+++i++v+++++++           
     hh13530   139 ---VIRDAP-------WTLTPEFLEKHKIDFVAHDDIPYS---------- 168  

                   srvylreeldkyplgkivipdlpyndtegiSSTeIRer<-*
                       ++++ d+y++ k+++ ++p+ +tegiS+++I++r   
     hh13530   169 ----SAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITR    202  

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