hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-17033637/chunk_1/iprscan-20090525-17033637.nocrc
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Query sequence: hh13727
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 257.6    9.7e-73   9
SM00349                                                 139.4    3.7e-37   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1      42   100 ..     1    62 []   139.4  3.7e-37
SM00355      1/9     233   255 ..     1    23 []    25.5   0.0074
SM00355      2/9     261   283 ..     1    23 []    30.0  0.00033
SM00355      3/9     289   311 ..     1    23 []    29.1  0.00059
SM00355      4/9     317   339 ..     1    23 []    30.7   0.0002
SM00355      5/9     345   367 ..     1    23 []    30.4  0.00025
SM00355      6/9     373   395 ..     1    23 []    29.7   0.0004
SM00355      7/9     401   423 ..     1    23 []    30.0  0.00033
SM00355      8/9     429   451 ..     1    23 []    30.2  0.00029
SM00355      9/9     457   479 ..     1    23 []    22.1     0.08

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 42 to 100: score 139.4, E = 3.7e-37
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                        F+DVA+ FsqEEW++L paQr+LYRdVMlE+YsnLvSLG ++vsk
     hh13727    42    --FRDVAIVFSQEEWQWLAPAQRDLYRDVMLETYSNLVSLG-LAVSK 85   

                   pdliskLEqgeEpwi<-*
                   pd+is LEqg+Epw+   
     hh13727    86 PDVISFLEQGKEPWM    100  

SM00355: domain 1 of 9, from 233 to 255: score 25.5, E = 0.0074
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f+  + L++H  +H   
     hh13727   233    YKCKE-CGKAFKYGsRLIQHENIH    255  

SM00355: domain 2 of 9, from 261 to 283: score 30.0, E = 0.00033
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+s +++++H+rvH   
     hh13727   261    YECKE-CGKAFNSGsNFIQHQRVH    283  

SM00355: domain 3 of 9, from 289 to 311: score 29.1, E = 0.00059
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  C k fs+ ++L++H+r+H   
     hh13727   289    YECKD-CEKAFSRSsQLIEHQRTH    311  

SM00355: domain 4 of 9, from 317 to 339: score 30.7, E = 0.0002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++ ++Lk H+r+H   
     hh13727   317    YQCKE-CGKAFNRIsHLKVHYRIH    339  

SM00355: domain 5 of 9, from 345 to 367: score 30.4, E = 0.00025
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk+fs++++L++H+ vH   
     hh13727   345    YACKE-CGKTFSHRsQLIQHQTVH    367  

SM00355: domain 6 of 9, from 373 to 395: score 29.7, E = 0.0004
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++ + L+rH+r+H   
     hh13727   373    YECKE-CGKAFNQGsTLIRHQRIH    395  

SM00355: domain 7 of 9, from 401 to 423: score 30.0, E = 0.00033
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++Lk+H+r+H   
     hh13727   401    YECKV-CGKAFRVSsQLKQHQRIH    423  

SM00355: domain 8 of 9, from 429 to 451: score 30.2, E = 0.00029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f++ ++L+ H+r+H   
     hh13727   429    YQCKV-CGRAFKRVsHLTVHYRIH    451  

SM00355: domain 9 of 9, from 457 to 479: score 22.1, E = 0.08
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++L++H+ +H   
     hh13727   457    YECKE-CGKAFSHCsQLIHHQVIH    479  

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