hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-12090682/chunk_1/iprscan-20080812-12090682.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh13729 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.fs Protein tyrosine kinase 302.5 7.1e-88 1 PF07714.7.ls Protein tyrosine kinase 197.8 2.3e-56 1 PF00069.15.fs Protein kinase domain 102.4 5.8e-29 1 PF07679.6.fs Immunoglobulin I-set domain 64.4 3.5e-18 3 PF07679.6.ls Immunoglobulin I-set domain 46.3 9.7e-11 1 PF01462.9.fs Leucine rich repeat N-terminal domain 32.7 5.2e-09 1 PF00069.15.ls Protein kinase domain 3.8 8e-09 1 PF01462.9.ls Leucine rich repeat N-terminal domain 34.5 3.4e-07 1 PF00560.23.ls Leucine Rich Repeat 20.6 0.0053 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01462.9.fs 1/1 77 106 .. 1 34 [] 32.7 5.2e-09 PF01462.9.ls 1/1 77 106 .. 1 34 [] 34.5 3.4e-07 PF00560.23.ls 2/3 162 184 .. 1 24 [] 13.3 0.85 PF07679.6.fs 1/3 243 329 .. 1 96 [] 44.4 2.4e-12 PF07679.6.ls 1/1 243 329 .. 1 96 [] 46.3 9.7e-11 PF07714.7.fs 1/1 584 757 .. 1 174 [. 302.5 7.1e-88 PF00069.15.fs 1/1 584 745 .. 1 161 [. 102.4 5.8e-29 PF00069.15.ls 1/1 584 781 .] 1 287 [] 3.8 8e-09 PF07714.7.ls 1/1 584 780 .. 1 272 [] 197.8 2.3e-56 Alignments of top-scoring domains: PF01462.9.fs: domain 1 of 1, from 77 to 106: score 32.7, E = 5.2e-09 *->aCpapCtCserytdglvVdCsgrgLt.vavPrdlP<-* aCp +C+Cs +++++Cs+++ + va+Pr P hh13729 77 ACPTSCKCS-----ASRIWCSDPSPGiVAFPRLEP 106 PF01462.9.ls: domain 1 of 1, from 77 to 106: score 34.5, E = 3.4e-07 *->aCpapCtCserytdglvVdCsgrgLt.vavPrdlP<-* aCp +C+Cs +++++Cs+++ + va+Pr P hh13729 77 ACPTSCKCS-----ASRIWCSDPSPGiVAFPRLEP 106 PF00560.23.ls: domain 2 of 3, from 162 to 184: score 13.3, E = 0.85 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+++++ + N +lt sl+ ++++l hh13729 162 NLQHINFTR-N-KLT-SLSRKhFrHL 184 PF07679.6.fs: domain 1 of 3, from 243 to 329: score 44.4, E = 2.4e-12 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ +++V eG+s++++C V G+P P W ++ l s hh13729 243 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNMYWDVGN--LVS---- 283 sdrfkvtydgGsgtytLtIsnvqpdDsGk.YtCvAtNsaGeaeasaeLtV +++ ++ +L+I n+ +dDsGk+ +CvA+N +Ge++ s++LtV hh13729 284 --KHMNETSH--TQGSLRITNISSDDSGKqISCVAENLVGEDQDSVNLTV 329 <-* hh13729 - - PF07679.6.ls: domain 1 of 1, from 243 to 329: score 46.3, E = 9.7e-11 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ +++V eG+s++++C V G+P P W ++ l s hh13729 243 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNMYWDVGN--LVS---- 283 sdrfkvtydgGsgtytLtIsnvqpdDsGk.YtCvAtNsaGeaeasaeLtV +++ ++ +L+I n+ +dDsGk+ +CvA+N +Ge++ s++LtV hh13729 284 --KHMNETSH--TQGSLRITNISSDDSGKqISCVAENLVGEDQDSVNLTV 329 <-* hh13729 - - PF07714.7.fs: domain 1 of 1, from 584 to 757: score 302.5, E = 7.1e-88 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei ++l ++LGeGaFG+V++++++ ++++++i VAVKtLk+ ++ hh13729 584 IVLKRELGEGAFGKVFLAECYNlCPEQDKILVAVKTLKD-ASDNA-- 627 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd r+dF rEA+++++l +H++iV+++Gvc++ g+P l++V+Eym++Gd hh13729 628 -RKDFHREAELLTNL-QHEHIVKFYGVCVE-GDP----LIMVFEYMKHGD 670 LldfLrkhr..........egrpLtlkdLlsfalQiAkGMeYLesknfvH L +fLr+h ++ +++++ Lt +++l++a+QiA+GM YL+s++fvH hh13729 671 LNKFLRAHGpdavlmaegnPPTELTQSQMLHIAQQIAAGMVYLASQHFVH 720 RDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkg<-* RDLA+RNcLV+enl VKI+DFG++Rd+y++dyY r+++ hh13729 721 RDLATRNCLVGENLLVKIGDFGMSRDVYSTDYY-RVSS 757 PF00069.15.fs: domain 1 of 1, from 584 to 745: score 102.4, E = 5.8e-29 *->yelleklGsGsfGtV.....ykakhkgtgkiVAvKiikkrkekskkd ++l++ lG+G+fG+V + y + + ++VAvK++k +++ kd hh13729 584 IVLKRELGEGAFGKVflaecYNLCPEQDKILVAVKTLKDASDNARKD 630 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf +++ E+++l +L+H++Iv++++v+ ++d l +V+Ey+ +G dL hh13729 631 ---FHR-EAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHG----DLN 672 dyls....e...trrkgpll.fsedeakkialQilrgleYLHsngiiHRD +l+ ++++ +++p ++++ + +ia Qi+ g+ YL s+ ++HRD hh13729 673 KFLRahgpDavlMAEGNPPTeLTQSQMLHIAQQIAAGMVYLASQHFVHRD 722 LKPeNILldnngvvdaflKiaDFGlAk<-* L N+L+ +n v Ki+DFG ++ hh13729 723 LATRNCLVGENLLV----KIGDFGMSR 745 PF00069.15.ls: domain 1 of 1, from 584 to 781: score 3.8, E = 8e-09 *->yelleklGsGsfGtV.....ykakhkgtgkiVAvKiikkrkekskkd ++l++ lG+G+fG+V + y + + ++VAvK++k +++ kd hh13729 584 IVLKRELGEGAFGKVflaecYNLCPEQDKILVAVKTLKDASDNARKD 630 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf +++ E+++l +L+H++Iv++++v+ ++d l +V+Ey+ +G dL hh13729 631 ---FHR-EAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHG----DLN 672 dyls....e...trrkgpll.fsedeakkialQilrgleYLHsngiiHRD +l+ ++++ +++p ++++ + +ia Qi+ g+ YL s+ ++HRD hh13729 673 KFLRahgpDavlMAEGNPPTeLTQSQMLHIAQQIAAGMVYLASQHFVHRD 722 LKPeNILldnngvvdaflKiaDFGlAkklstssslttfvGTpwYmAPEvl L N+L+ +n v Ki+DFG ++ ++ T +Y+ v hh13729 723 LATRNCLVGENLLV----KIGDFGMSR---------DVYSTDYYR---VS 756 lggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpp + +g l ++ +++ hh13729 757 S----------------------CADQRPQGP---------LSLRDPCCI 775 lefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqH + Rl+ hh13729 776 -------------------------------------CLLRLS------- 781 Pwf<-* hh13729 - --- - PF07714.7.ls: domain 1 of 1, from 584 to 780: score 197.8, E = 2.3e-56 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei ++l ++LGeGaFG+V++++++ ++++++i VAVKtLk+ ++ hh13729 584 IVLKRELGEGAFGKVFLAECYNlCPEQDKILVAVKTLKD-ASDNA-- 627 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd r+dF rEA+++++l +H++iV+++Gvc++ g+P l++V+Eym++Gd hh13729 628 -RKDFHREAELLTNL-QHEHIVKFYGVCVE-GDP----LIMVFEYMKHGD 670 LldfLrkhr..........egrpLtlkdLlsfalQiAkGMeYLesknfvH L +fLr+h ++ +++++ Lt +++l++a+QiA+GM YL+s++fvH hh13729 671 LNKFLRAHGpdavlmaegnPPTELTQSQMLHIAQQIAAGMVYLASQHFVH 720 RDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPE RDLA+RNcLV+enl VKI+DFG++Rd+y++dyY r+++ hh13729 721 RDLATRNCLVGENLLVKIGDFGMSRDVYSTDYY-RVSS------------ 757 slkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyR + + P +s + + hh13729 758 -----------------------CA-DQRP-QGPLSLRD-PCCI------ 775 LprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* ++ +L hh13729 776 -------------------------------CLLRL 780 //